Analysis of interatomic Contacts of Structural Units in PDB entry:
5COJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5COJ entry

There are 6 chains in PDB entry 5COJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 265
B
 MET 1GLU 261
C
 MET 1VAL 262
E
 ASN 2LEU 266
F
 ASN 2ILE 257
H
 MET 1PRO 89
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 84 helices in PDB entry 5COJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 11Right-handed alpha
Helix 2
AA2
A
22 33Right-handed alpha
Helix 3
AA3
A
42 44Right-handed 310
Helix 4
AA4
A
45 53Right-handed alpha
Helix 5
AA5
A
64 82Right-handed alpha
Helix 6
AA6
A
91 94Right-handed 310
Helix 7
AA7
A
95 109Right-handed alpha
Helix 8
AA8
A
118 126Right-handed alpha
Helix 9
AA9
A
141 154Right-handed alpha
Helix 10
AB1
A
179 185Right-handed 310
Helix 11
AB2
A
187 199Right-handed alpha
Helix 12
AB3
A
207 228Right-handed alpha
Helix 13
AB4
A
233 248Right-handed alpha
Helix 14
AB5
A
249 257Right-handed alpha
Helix 15
AB6
B
2 11Right-handed alpha
Helix 16
AB7
B
22 33Right-handed alpha
Helix 17
AB8
B
42 44Right-handed 310
Helix 18
AB9
B
45 53Right-handed alpha
Helix 19
AC1
B
64 82Right-handed alpha
Helix 20
AC2
B
91 94Right-handed 310
Helix 21
AC3
B
95 109Right-handed alpha
Helix 22
AC4
B
118 126Right-handed alpha
Helix 23
AC5
B
141 154Right-handed alpha
Helix 24
AC6
B
179 185Right-handed 310
Helix 25
AC7
B
187 199Right-handed alpha
Helix 26
AC8
B
207 228Right-handed alpha
Helix 27
AC9
B
233 248Right-handed alpha
Helix 28
AD1
B
249 257Right-handed alpha
Helix 29
AD2
C
2 11Right-handed alpha
Helix 30
AD3
C
22 34Right-handed alpha
Helix 31
AD4
C
42 44Right-handed 310
Helix 32
AD5
C
45 53Right-handed alpha
Helix 33
AD6
C
64 82Right-handed alpha
Helix 34
AD7
C
91 94Right-handed 310
Helix 35
AD8
C
95 109Right-handed alpha
Helix 36
AD9
C
118 126Right-handed alpha
Helix 37
AE1
C
141 154Right-handed alpha
Helix 38
AE2
C
179 185Right-handed 310
Helix 39
AE3
C
187 199Right-handed alpha
Helix 40
AE4
C
207 227Right-handed alpha
Helix 41
AE5
C
233 248Right-handed alpha
Helix 42
AE6
C
249 257Right-handed alpha
Helix 43
AE7
E
3 11Right-handed alpha
Helix 44
AE8
E
22 33Right-handed alpha
Helix 45
AE9
E
42 44Right-handed 310
Helix 46
AF1
E
45 53Right-handed alpha
Helix 47
AF2
E
64 82Right-handed alpha
Helix 48
AF3
E
91 94Right-handed 310
Helix 49
AF4
E
95 109Right-handed alpha
Helix 50
AF5
E
118 125Right-handed alpha
Helix 51
AF6
E
141 154Right-handed alpha
Helix 52
AF7
E
179 185Right-handed 310
Helix 53
AF8
E
187 199Right-handed alpha
Helix 54
AF9
E
207 228Right-handed alpha
Helix 55
AG1
E
233 248Right-handed alpha
Helix 56
AG2
E
249 257Right-handed alpha
Helix 57
AG3
F
3 11Right-handed alpha
Helix 58
AG4
F
22 33Right-handed alpha
Helix 59
AG5
F
42 44Right-handed 310
Helix 60
AG6
F
45 53Right-handed alpha
Helix 61
AG7
F
64 82Right-handed alpha
Helix 62
AG8
F
91 94Right-handed 310
Helix 63
AG9
F
95 109Right-handed alpha
Helix 64
AH1
F
118 125Right-handed alpha
Helix 65
AH2
F
142 154Right-handed alpha
Helix 66
AH3
F
179 185Right-handed alpha
Helix 67
AH4
F
188 199Right-handed alpha
Helix 68
AH5
F
207 228Right-handed alpha
Helix 69
AH6
F
233 248Right-handed alpha
Helix 70
AH7
F
249 257Right-handed alpha
Helix 71
AH8
H
2 11Right-handed alpha
Helix 72
AH9
H
22 34Right-handed alpha
Helix 73
AI1
H
42 44Right-handed 310
Helix 74
AI2
H
45 53Right-handed alpha
Helix 75
AI3
H
64 82Right-handed alpha
Helix 76
AI4
H
91 94Right-handed 310
Helix 77
AI5
H
95 109Right-handed alpha
Helix 78
AI6
H
118 126Right-handed alpha
Helix 79
AI7
H
142 154Right-handed alpha
Helix 80
AI8
H
179 185Right-handed 310
Helix 81
AI9
H
187 199Right-handed alpha
Helix 82
AJ1
H
207 228Right-handed alpha
Helix 83
AJ2
H
233 248Right-handed alpha
Helix 84
AJ3
H
249 257Right-handed alpha
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There are 6 sheets in PDB entry 5COJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
13 17parallel
Strand 3
A
55 59parallel
Strand 4
A
85 88parallel
Strand 5
A
113 117parallel
Strand 6
A
156 160parallel
Strand 7
A
164 168anti-parallel
Strand 8
A
171 175anti-parallel
Strand 9
A
259 264anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
13 17parallel
Strand 3
B
55 59parallel
Strand 4
B
85 88parallel
Strand 5
B
113 117parallel
Strand 6
B
156 160parallel
Strand 7
B
164 168anti-parallel
Strand 8
B
171 175anti-parallel
Strand 9
B
259 260anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
36 38first strand
Strand 2
C
13 17parallel
Strand 3
C
55 59parallel
Strand 4
C
85 88parallel
Strand 5
C
113 117parallel
Strand 6
C
156 160parallel
Strand 7
C
164 168anti-parallel
Strand 8
C
171 175anti-parallel
Strand 9
C
259 261anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
36 38first strand
Strand 2
E
13 17parallel
Strand 3
E
55 59parallel
Strand 4
E
85 88parallel
Strand 5
E
113 117parallel
Strand 6
E
156 160parallel
Strand 7
E
164 168anti-parallel
Strand 8
E
171 175anti-parallel
Strand 9
E
259 264anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
36 38first strand
Strand 2
F
13 17parallel
Strand 3
F
55 59parallel
Strand 4
F
85 88parallel
Strand 5
F
113 117parallel
Strand 6
F
156 160parallel
Strand 7
F
164 167anti-parallel
Strand 8
F
172 175anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
36 38first strand
Strand 2
H
13 17parallel
Strand 3
H
55 59parallel
Strand 4
H
85 88parallel
Strand 5
H
113 117parallel
Strand 6
H
156 160parallel
Strand 7
H
164 168anti-parallel
Strand 8
H
171 175anti-parallel
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