Analysis of interatomic Contacts of Structural Units in PDB entry:
5COQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5COQ entry

There are 4 chains in PDB entry 5COQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2LEU 269
B
 THR 2LEU 269
C
 THR 2LEU 269
D
 THR 2LEU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5COQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
67 83Right-handed alpha
Helix 4
AA4
A
99 103Right-handed 310
Helix 5
AA5
A
107 111Right-handed 310
Helix 6
AA6
A
112 124Right-handed alpha
Helix 7
AA7
A
124 135Right-handed alpha
Helix 8
AA8
A
158 180Right-handed alpha
Helix 9
AA9
A
181 183Right-handed 310
Helix 10
AB1
A
196 202Right-handed alpha
Helix 11
AB2
A
211 226Right-handed alpha
Helix 12
AB3
A
235 247Right-handed alpha
Helix 13
AB4
A
263 267Right-handed 310
Helix 14
AB5
B
20 32Right-handed alpha
Helix 15
AB6
B
43 52Right-handed alpha
Helix 16
AB7
B
67 83Right-handed alpha
Helix 17
AB8
B
99 103Right-handed 310
Helix 18
AB9
B
107 111Right-handed 310
Helix 19
AC1
B
112 124Right-handed alpha
Helix 20
AC2
B
124 135Right-handed alpha
Helix 21
AC3
B
158 181Right-handed alpha
Helix 22
AC4
B
196 205Right-handed alpha
Helix 23
AC5
B
209 226Right-handed alpha
Helix 24
AC6
B
235 247Right-handed alpha
Helix 25
AC7
B
263 267Right-handed 310
Helix 26
AC8
C
20 32Right-handed alpha
Helix 27
AC9
C
43 52Right-handed alpha
Helix 28
AD1
C
67 83Right-handed alpha
Helix 29
AD2
C
99 103Right-handed 310
Helix 30
AD3
C
107 111Right-handed 310
Helix 31
AD4
C
112 124Right-handed alpha
Helix 32
AD5
C
124 135Right-handed alpha
Helix 33
AD6
C
158 181Right-handed alpha
Helix 34
AD7
C
196 202Right-handed alpha
Helix 35
AD8
C
215 226Right-handed alpha
Helix 36
AD9
C
235 247Right-handed alpha
Helix 37
AE1
C
263 267Right-handed 310
Helix 38
AE2
D
20 32Right-handed alpha
Helix 39
AE3
D
43 51Right-handed alpha
Helix 40
AE4
D
52 54Right-handed 310
Helix 41
AE5
D
67 83Right-handed alpha
Helix 42
AE6
D
99 103Right-handed 310
Helix 43
AE7
D
107 111Right-handed 310
Helix 44
AE8
D
112 124Right-handed alpha
Helix 45
AE9
D
124 135Right-handed alpha
Helix 46
AF1
D
159 181Right-handed alpha
Helix 47
AF2
D
196 202Right-handed alpha
Helix 48
AF3
D
211 226Right-handed alpha
Helix 49
AF4
D
235 247Right-handed alpha
Helix 50
AF5
D
263 267Right-handed 310
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There are 4 sheets in PDB entry 5COQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
35 40parallel
Strand 3
A
9 13parallel
Strand 4
A
88 93parallel
Strand 5
A
138 148parallel
Strand 6
A
185 191parallel
Strand 7
A
256 260parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
35 40parallel
Strand 3
B
9 13parallel
Strand 4
B
88 93parallel
Strand 5
B
138 148parallel
Strand 6
B
185 191parallel
Strand 7
B
256 260parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
35 40parallel
Strand 3
C
9 13parallel
Strand 4
C
88 93parallel
Strand 5
C
138 148parallel
Strand 6
C
185 191parallel
Strand 7
C
256 260parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
35 40parallel
Strand 3
D
9 13parallel
Strand 4
D
88 93parallel
Strand 5
D
138 148parallel
Strand 6
D
185 191parallel
Strand 7
D
256 260parallel
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