Analysis of interatomic Contacts of Structural Units in PDB entry:
5COX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5COX entry

There are 4 chains in PDB entry 5COX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 33	GLN 583
B	ALA 33	GLN 583
C	ALA 33	GLN 583
D	ALA 33	GLN 583

There are128 helices in PDB entry 5COX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	35	38	Right-handed 310
Helix 2	2	A	74	82	Right-handed alpha
Helix 3	3	A	86	94	Right-handed alpha
Helix 4	4	A	97	105	Right-handed alpha
Helix 5	5	A	106	123	Right-handed alpha
Helix 6	6	A	139	143	Right-handed alpha
Helix 7	7	A	174	181	Right-handed alpha
Helix 8	8	A	196	209	Right-handed alpha
Helix 9	9	A	231	234	Right-handed alpha
Helix 10	10	A	238	244	Right-handed alpha
Helix 11	11	A	266	269	Right-handed alpha
Helix 12	12	A	290	293	Right-handed 310
Helix 13	13	A	296	319	Right-handed alpha
Helix 14	14	A	325	346	Right-handed alpha
Helix 15	15	A	348	353	Right-handed alpha
Helix 16	16	A	363	366	Right-handed 310
Helix 17	17	A	379	384	Right-handed alpha
Helix 18	18	A	388	390	Right-handed 310
Helix 19	19	A	404	407	Right-handed alpha
Helix 20	20	A	411	417	Right-handed alpha
Helix 21	21	A	420	427	Right-handed alpha
Helix 22	22	A	445	457	Right-handed alpha
Helix 23	23	A	463	469	Right-handed alpha
Helix 24	24	A	478	482	Right-handed alpha
Helix 25	25	A	486	495	Right-handed alpha
Helix 26	26	A	498	500	Right-handed 310
Helix 27	27	A	504	508	Right-handed alpha
Helix 28	28	A	520	535	Right-handed alpha
Helix 29	29	A	538	540	Right-handed 310
Helix 30	30	A	547	550	Right-handed 310
Helix 31	31	A	554	561	Right-handed alpha
Helix 32	32	A	564	571	Right-handed alpha
Helix 33	33	B	35	38	Right-handed 310
Helix 34	34	B	74	82	Right-handed alpha
Helix 35	35	B	86	94	Right-handed alpha
Helix 36	36	B	97	105	Right-handed alpha
Helix 37	37	B	106	123	Right-handed alpha
Helix 38	38	B	139	143	Right-handed alpha
Helix 39	39	B	174	181	Right-handed alpha
Helix 40	40	B	196	209	Right-handed alpha
Helix 41	41	B	231	234	Right-handed alpha
Helix 42	42	B	238	244	Right-handed alpha
Helix 43	43	B	266	269	Right-handed alpha
Helix 44	44	B	290	293	Right-handed 310
Helix 45	45	B	296	319	Right-handed alpha
Helix 46	46	B	325	346	Right-handed alpha
Helix 47	47	B	348	353	Right-handed alpha
Helix 48	48	B	363	366	Right-handed 310
Helix 49	49	B	379	384	Right-handed alpha
Helix 50	50	B	388	390	Right-handed 310
Helix 51	51	B	404	407	Right-handed alpha
Helix 52	52	B	411	417	Right-handed alpha
Helix 53	53	B	420	427	Right-handed alpha
Helix 54	54	B	445	457	Right-handed alpha
Helix 55	55	B	463	469	Right-handed alpha
Helix 56	56	B	478	482	Right-handed alpha
Helix 57	57	B	486	495	Right-handed alpha
Helix 58	58	B	498	500	Right-handed 310
Helix 59	59	B	504	508	Right-handed alpha
Helix 60	60	B	520	535	Right-handed alpha
Helix 61	61	B	538	540	Right-handed 310
Helix 62	62	B	547	550	Right-handed 310
Helix 63	63	B	554	561	Right-handed alpha
Helix 64	64	B	564	571	Right-handed alpha
Helix 65	65	C	35	38	Right-handed 310
Helix 66	66	C	74	82	Right-handed alpha
Helix 67	67	C	86	94	Right-handed alpha
Helix 68	68	C	97	105	Right-handed alpha
Helix 69	69	C	106	123	Right-handed alpha
Helix 70	70	C	139	143	Right-handed alpha
Helix 71	71	C	174	181	Right-handed alpha
Helix 72	72	C	196	209	Right-handed alpha
Helix 73	73	C	231	234	Right-handed alpha
Helix 74	74	C	238	244	Right-handed alpha
Helix 75	75	C	266	269	Right-handed alpha
Helix 76	76	C	290	293	Right-handed 310
Helix 77	77	C	296	319	Right-handed alpha
Helix 78	78	C	325	346	Right-handed alpha
Helix 79	79	C	348	353	Right-handed alpha
Helix 80	80	C	363	366	Right-handed 310
Helix 81	81	C	379	384	Right-handed alpha
Helix 82	82	C	388	390	Right-handed 310
Helix 83	83	C	404	407	Right-handed alpha
Helix 84	84	C	411	417	Right-handed alpha
Helix 85	85	C	420	427	Right-handed alpha
Helix 86	86	C	445	457	Right-handed alpha
Helix 87	87	C	463	469	Right-handed alpha
Helix 88	88	C	478	482	Right-handed alpha
Helix 89	89	C	486	495	Right-handed alpha
Helix 90	90	C	498	500	Right-handed 310
Helix 91	91	C	504	508	Right-handed alpha
Helix 92	92	C	520	535	Right-handed alpha
Helix 93	93	C	538	540	Right-handed 310
Helix 94	94	C	547	550	Right-handed 310
Helix 95	95	C	554	561	Right-handed alpha
Helix 96	96	C	564	571	Right-handed alpha
Helix 97	97	D	35	38	Right-handed 310
Helix 98	98	D	74	82	Right-handed alpha
Helix 99	99	D	86	94	Right-handed alpha
Helix 100	100	D	97	105	Right-handed alpha
Helix 101	101	D	106	123	Right-handed alpha
Helix 102	102	D	139	143	Right-handed alpha
Helix 103	103	D	174	181	Right-handed alpha
Helix 104	104	D	196	209	Right-handed alpha
Helix 105	105	D	231	234	Right-handed alpha
Helix 106	106	D	238	244	Right-handed alpha
Helix 107	107	D	266	269	Right-handed alpha
Helix 108	108	D	290	293	Right-handed 310
Helix 109	109	D	296	319	Right-handed alpha
Helix 110	110	D	325	346	Right-handed alpha
Helix 111	111	D	348	353	Right-handed alpha
Helix 112	112	D	363	366	Right-handed 310
Helix 113	113	D	379	384	Right-handed alpha
Helix 114	114	D	388	390	Right-handed 310
Helix 115	115	D	404	407	Right-handed alpha
Helix 116	116	D	411	417	Right-handed alpha
Helix 117	117	D	420	427	Right-handed alpha
Helix 118	118	D	443	457	Right-handed 310
Helix 119	119	D	463	469	Right-handed alpha
Helix 120	120	D	478	482	Right-handed alpha
Helix 121	121	D	486	495	Right-handed alpha
Helix 122	122	D	498	500	Right-handed 310
Helix 123	123	D	504	508	Right-handed alpha
Helix 124	124	D	520	535	Right-handed alpha
Helix 125	125	D	538	540	Right-handed 310
Helix 126	126	D	547	550	Right-handed 310
Helix 127	127	D	554	561	Right-handed alpha
Helix 128	128	D	564	571	Right-handed alpha

There are 9 sheets in PDB entry 5COX. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	55	57	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	257	first strand
Strand 2	A	260	262	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	B	55	57	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	257	first strand
Strand 2	B	260	262	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	397	first strand
Strand 2	B	400	402	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	49	first strand
Strand 2	C	55	57	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	262	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	49	first strand
Strand 2	D	55	57	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	257	first strand
Strand 2	D	260	262	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5COX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5COX