Analysis of interatomic Contacts of Structural Units in PDB entry:
5COZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5COZ entry

There is 1 chain in PDB entry 5COZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 35GLN 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5COZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 46Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
95 111Right-handed alpha
Helix 4
AA4
A
113 117Right-handed 310
Helix 5
AA5
A
152 161Right-handed alpha
Helix 6
AA6
A
172 178Right-handed 310
Helix 7
AA7
A
187 202Right-handed alpha
Helix 8
AA8
A
254 259Right-handed alpha
Helix 9
AA9
A
298 312Right-handed alpha
Helix 10
AB1
A
313 317Right-handed 310
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There are 4 sheets in PDB entry 5COZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
66 73anti-parallel
Strand 3
A
318 334parallel
Strand 4
A
337 353anti-parallel
Strand 5
A
81 89anti-parallel
Strand 6
A
285 295anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
66 73anti-parallel
Strand 3
A
318 334parallel
Strand 4
A
337 353anti-parallel
Strand 5
A
361 371anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 124first strand
Strand 2
A
127 134anti-parallel
Strand 3
A
139 143anti-parallel
Strand 4
A
148 151anti-parallel
Strand 5
A
275 281anti-parallel
Strand 6
A
267 272anti-parallel
Strand 7
A
234 239anti-parallel
Strand 8
A
211 215anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
246 247anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il