Analysis of interatomic Contacts of Structural Units in PDB entry:
5CPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CPF entry

There are 4 chains in PDB entry 5CPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 3LEU 269
B
 GLY 3LEU 269
C
 GLY 3LEU 269
D
 GLY 3LEU 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5CPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 32Right-handed alpha
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
67 83Right-handed alpha
Helix 4
AA4
A
112 124Right-handed alpha
Helix 5
AA5
A
124 135Right-handed alpha
Helix 6
AA6
A
158 182Right-handed alpha
Helix 7
AA7
A
197 203Right-handed alpha
Helix 8
AA8
A
208 226Right-handed alpha
Helix 9
AA9
A
235 247Right-handed alpha
Helix 10
AB1
B
20 32Right-handed alpha
Helix 11
AB2
B
43 52Right-handed alpha
Helix 12
AB3
B
67 83Right-handed alpha
Helix 13
AB4
B
99 103Right-handed 310
Helix 14
AB5
B
107 111Right-handed 310
Helix 15
AB6
B
112 124Right-handed alpha
Helix 16
AB7
B
124 135Right-handed alpha
Helix 17
AB8
B
158 182Right-handed alpha
Helix 18
AB9
B
196 206Right-handed alpha
Helix 19
AC1
B
207 211Right-handed 310
Helix 20
AC2
B
212 217Right-handed alpha
Helix 21
AC3
B
235 247Right-handed alpha
Helix 22
AC4
C
20 32Right-handed alpha
Helix 23
AC5
C
43 52Right-handed alpha
Helix 24
AC6
C
67 83Right-handed alpha
Helix 25
AC7
C
112 124Right-handed alpha
Helix 26
AC8
C
124 135Right-handed alpha
Helix 27
AC9
C
136 138Right-handed 310
Helix 28
AD1
C
158 183Right-handed alpha
Helix 29
AD2
C
198 203Right-handed alpha
Helix 30
AD3
C
208 226Right-handed alpha
Helix 31
AD4
C
235 247Right-handed alpha
Helix 32
AD5
C
263 267Right-handed 310
Helix 33
AD6
D
20 32Right-handed alpha
Helix 34
AD7
D
43 52Right-handed alpha
Helix 35
AD8
D
67 83Right-handed alpha
Helix 36
AD9
D
99 103Right-handed 310
Helix 37
AE1
D
107 111Right-handed 310
Helix 38
AE2
D
112 124Right-handed alpha
Helix 39
AE3
D
125 135Right-handed alpha
Helix 40
AE4
D
158 179Right-handed alpha
Helix 41
AE5
D
196 202Right-handed alpha
Helix 42
AE6
D
207 211Right-handed 310
Helix 43
AE7
D
212 224Right-handed alpha
Helix 44
AE8
D
235 247Right-handed alpha
Helix 45
AE9
D
263 267Right-handed 310
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There are 4 sheets in PDB entry 5CPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
35 40parallel
Strand 3
A
9 12parallel
Strand 4
A
88 93parallel
Strand 5
A
138 148parallel
Strand 6
A
185 191parallel
Strand 7
A
257 260parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 62first strand
Strand 2
B
34 40parallel
Strand 3
B
7 12parallel
Strand 4
B
88 93parallel
Strand 5
B
138 148parallel
Strand 6
B
185 191parallel
Strand 7
B
256 260parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 62first strand
Strand 2
C
35 40parallel
Strand 3
C
9 12parallel
Strand 4
C
91 93parallel
Strand 5
C
143 148parallel
Strand 6
C
185 191parallel
Strand 7
C
256 260parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 62first strand
Strand 2
D
35 40parallel
Strand 3
D
9 13parallel
Strand 4
D
88 93parallel
Strand 5
D
138 148parallel
Strand 6
D
185 191parallel
Strand 7
D
257 260parallel
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