Analysis of interatomic Contacts of Structural Units in PDB entry:
5CPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CPM entry

There are 2 chains in PDB entry 5CPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLU 360
B
 SER 2GLU 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5CPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
35 48Right-handed alpha
Helix 3
AA3
A
61 65Right-handed 310
Helix 4
AA4
A
75 92Right-handed alpha
Helix 5
AA5
A
103 107Right-handed 310
Helix 6
AA6
A
111 115Right-handed 310
Helix 7
AA7
A
149 171Right-handed alpha
Helix 8
AA8
A
183 190Right-handed alpha
Helix 9
AA9
A
203 222Right-handed alpha
Helix 10
AB1
A
240 258Right-handed alpha
Helix 11
AB2
A
283 295Right-handed alpha
Helix 12
AB3
A
306 316Right-handed alpha
Helix 13
AB4
A
325 331Right-handed alpha
Helix 14
AB5
A
333 342Right-handed alpha
Helix 15
AB6
A
346 351Right-handed 310
Helix 16
AB7
A
352 360Right-handed alpha
Helix 17
AB8
B
2 6Right-handed 310
Helix 18
AB9
B
35 48Right-handed alpha
Helix 19
AC1
B
61 65Right-handed 310
Helix 20
AC2
B
75 92Right-handed alpha
Helix 21
AC3
B
103 107Right-handed 310
Helix 22
AC4
B
111 115Right-handed 310
Helix 23
AC5
B
149 171Right-handed alpha
Helix 24
AC6
B
183 190Right-handed alpha
Helix 25
AC7
B
203 222Right-handed alpha
Helix 26
AC8
B
240 258Right-handed alpha
Helix 27
AC9
B
283 295Right-handed alpha
Helix 28
AD1
B
306 316Right-handed alpha
Helix 29
AD2
B
325 331Right-handed alpha
Helix 30
AD3
B
333 342Right-handed alpha
Helix 31
AD4
B
346 351Right-handed 310
Helix 32
AD5
B
352 360Right-handed alpha
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There are 6 sheets in PDB entry 5CPM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
52 59parallel
Strand 3
A
95 101parallel
Strand 4
A
174 179parallel
Strand 5
A
228 235parallel
Strand 6
A
262 267parallel
Strand 7
A
298 300parallel
Strand 8
A
321 323parallel
Strand 9
A
19 21parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 131first strand
Strand 2
A
146 147parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
13 15anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 21first strand
Strand 2
B
52 59parallel
Strand 3
B
95 101parallel
Strand 4
B
174 179parallel
Strand 5
B
228 233parallel
Strand 6
B
262 266parallel
Strand 7
B
298 300parallel
Strand 8
B
321 323parallel
Strand 9
B
19 21parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 131first strand
Strand 2
B
146 147parallel
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