Analysis of interatomic Contacts of Structural Units in PDB entry:
5CPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CPR entry

There is 1 chain in PDB entry 5CPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 MET 72SER 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 5CPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
73 94Right-handed alpha
Helix 2
AA2
B
134 148Right-handed alpha
Helix 3
AA3
B
149 158Right-handed alpha
Helix 4
AA4
B
163 168Right-handed alpha
Helix 5
AA5
B
171 187Right-handed alpha
Helix 6
AA6
B
188 190Right-handed 310
Helix 7
AA7
B
235 243Right-handed alpha
Helix 8
AA8
B
266 271Right-handed 310
Helix 9
AA9
B
313 317Right-handed 310
Helix 10
AB1
B
321 328Right-handed alpha
Helix 11
AB2
B
329 333Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 5CPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 199first strand
Strand 2
B
210 214anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 255first strand
Strand 2
B
260 265anti-parallel
Strand 3
B
223 234anti-parallel
Strand 4
B
288 293anti-parallel
Strand 5
B
279 283anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 273first strand
Strand 2
B
304 305parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il