Analysis of interatomic Contacts of Structural Units in PDB entry:
5CPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CPS entry

There are 2 chains in PDB entry 5CPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 60LEU 576
B
 SER 60LEU 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 5CPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 72Right-handed 310
Helix 2
AA2
A
77 81Right-handed 310
Helix 3
AA3
A
89 93Right-handed 310
Helix 4
AA4
A
103 117Right-handed alpha
Helix 5
AA5
A
145 149Right-handed 310
Helix 6
AA6
A
150 157Right-handed alpha
Helix 7
AA7
A
161 165Right-handed 310
Helix 8
AA8
A
175 197Right-handed alpha
Helix 9
AA9
A
199 211Right-handed alpha
Helix 10
AB1
A
211 231Right-handed alpha
Helix 11
AB2
A
235 239Right-handed 310
Helix 12
AB3
A
240 245Right-handed alpha
Helix 13
AB4
A
247 258Right-handed alpha
Helix 14
AB5
A
258 286Right-handed alpha
Helix 15
AB6
A
302 307Right-handed alpha
Helix 16
AB7
A
308 312Right-handed 310
Helix 17
AB8
A
344 350Right-handed alpha
Helix 18
AB9
A
353 367Right-handed alpha
Helix 19
AC1
A
374 378Right-handed 310
Helix 20
AC2
A
390 394Right-handed 310
Helix 21
AC3
A
401 413Right-handed alpha
Helix 22
AC4
A
426 437Right-handed alpha
Helix 23
AC5
A
445 447Right-handed 310
Helix 24
AC6
A
457 461Right-handed 310
Helix 25
AC7
A
476 484Right-handed alpha
Helix 26
AC8
A
485 496Right-handed alpha
Helix 27
AC9
A
500 502Right-handed 310
Helix 28
AD1
A
503 515Right-handed alpha
Helix 29
AD2
A
524 528Right-handed alpha
Helix 30
AD3
A
531 535Right-handed 310
Helix 31
AD4
A
555 558Right-handed 310
Helix 32
AD5
A
559 573Right-handed alpha
Helix 33
AD6
B
68 72Right-handed 310
Helix 34
AD7
B
77 81Right-handed 310
Helix 35
AD8
B
89 93Right-handed 310
Helix 36
AD9
B
103 117Right-handed alpha
Helix 37
AE1
B
145 149Right-handed 310
Helix 38
AE2
B
150 157Right-handed alpha
Helix 39
AE3
B
161 165Right-handed 310
Helix 40
AE4
B
175 197Right-handed alpha
Helix 41
AE5
B
199 211Right-handed alpha
Helix 42
AE6
B
211 231Right-handed alpha
Helix 43
AE7
B
235 239Right-handed 310
Helix 44
AE8
B
240 245Right-handed alpha
Helix 45
AE9
B
247 258Right-handed alpha
Helix 46
AF1
B
258 286Right-handed alpha
Helix 47
AF2
B
302 307Right-handed alpha
Helix 48
AF3
B
308 312Right-handed 310
Helix 49
AF4
B
344 350Right-handed alpha
Helix 50
AF5
B
353 367Right-handed alpha
Helix 51
AF6
B
374 378Right-handed 310
Helix 52
AF7
B
401 413Right-handed alpha
Helix 53
AF8
B
426 437Right-handed alpha
Helix 54
AF9
B
445 447Right-handed 310
Helix 55
AG1
B
457 461Right-handed 310
Helix 56
AG2
B
476 484Right-handed alpha
Helix 57
AG3
B
485 496Right-handed alpha
Helix 58
AG4
B
500 502Right-handed 310
Helix 59
AG5
B
503 515Right-handed alpha
Helix 60
AG6
B
524 528Right-handed alpha
Helix 61
AG7
B
531 535Right-handed 310
Helix 62
AG8
B
555 558Right-handed 310
Helix 63
AG9
B
559 573Right-handed alpha
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There are 4 sheets in PDB entry 5CPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
369 373parallel
Strand 3
A
289 295parallel
Strand 4
A
120 122parallel
Strand 5
A
83 87parallel
Strand 6
A
519 523parallel
Strand 7
A
465 468parallel
Strand 8
A
440 443parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 341first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
380 385anti-parallel
Strand 4
A
395 398anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 419first strand
Strand 2
B
369 373parallel
Strand 3
B
289 295parallel
Strand 4
B
120 122parallel
Strand 5
B
83 87parallel
Strand 6
B
519 523parallel
Strand 7
B
465 468parallel
Strand 8
B
440 443parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 341first strand
Strand 2
B
322 326anti-parallel
Strand 3
B
380 385anti-parallel
Strand 4
B
395 398anti-parallel
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