Analysis of interatomic Contacts of Structural Units in PDB entry:
5CPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CPT entry

There are 2 chains in PDB entry 5CPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 60LEU 576
B
 SER 60LEU 576
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 5CPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 81Right-handed 310
Helix 2
AA2
A
89 93Right-handed 310
Helix 3
AA3
A
103 117Right-handed alpha
Helix 4
AA4
A
145 149Right-handed 310
Helix 5
AA5
A
150 157Right-handed alpha
Helix 6
AA6
A
161 165Right-handed 310
Helix 7
AA7
A
175 197Right-handed alpha
Helix 8
AA8
A
199 211Right-handed alpha
Helix 9
AA9
A
211 231Right-handed alpha
Helix 10
AB1
A
235 239Right-handed 310
Helix 11
AB2
A
240 245Right-handed alpha
Helix 12
AB3
A
247 258Right-handed alpha
Helix 13
AB4
A
258 286Right-handed alpha
Helix 14
AB5
A
302 307Right-handed alpha
Helix 15
AB6
A
308 312Right-handed 310
Helix 16
AB7
A
344 350Right-handed alpha
Helix 17
AB8
A
353 367Right-handed alpha
Helix 18
AB9
A
374 378Right-handed 310
Helix 19
AC1
A
390 394Right-handed 310
Helix 20
AC2
A
401 413Right-handed alpha
Helix 21
AC3
A
426 436Right-handed alpha
Helix 22
AC4
A
445 447Right-handed 310
Helix 23
AC5
A
457 461Right-handed 310
Helix 24
AC6
A
476 483Right-handed alpha
Helix 25
AC7
A
487 496Right-handed alpha
Helix 26
AC8
A
500 502Right-handed 310
Helix 27
AC9
A
503 515Right-handed alpha
Helix 28
AD1
A
524 528Right-handed alpha
Helix 29
AD2
A
531 535Right-handed 310
Helix 30
AD3
A
555 558Right-handed 310
Helix 31
AD4
A
559 573Right-handed alpha
Helix 32
AD5
B
77 81Right-handed 310
Helix 33
AD6
B
89 93Right-handed 310
Helix 34
AD7
B
103 116Right-handed alpha
Helix 35
AD8
B
145 149Right-handed 310
Helix 36
AD9
B
150 157Right-handed alpha
Helix 37
AE1
B
161 165Right-handed 310
Helix 38
AE2
B
175 197Right-handed alpha
Helix 39
AE3
B
199 211Right-handed alpha
Helix 40
AE4
B
211 231Right-handed alpha
Helix 41
AE5
B
235 239Right-handed 310
Helix 42
AE6
B
240 245Right-handed alpha
Helix 43
AE7
B
247 258Right-handed alpha
Helix 44
AE8
B
258 286Right-handed alpha
Helix 45
AE9
B
302 307Right-handed alpha
Helix 46
AF1
B
308 312Right-handed 310
Helix 47
AF2
B
344 350Right-handed alpha
Helix 48
AF3
B
353 367Right-handed alpha
Helix 49
AF4
B
374 378Right-handed 310
Helix 50
AF5
B
401 413Right-handed alpha
Helix 51
AF6
B
426 436Right-handed alpha
Helix 52
AF7
B
445 447Right-handed 310
Helix 53
AF8
B
457 461Right-handed 310
Helix 54
AF9
B
476 483Right-handed alpha
Helix 55
AG1
B
485 496Right-handed alpha
Helix 56
AG2
B
500 502Right-handed 310
Helix 57
AG3
B
503 515Right-handed alpha
Helix 58
AG4
B
524 528Right-handed alpha
Helix 59
AG5
B
531 535Right-handed 310
Helix 60
AG6
B
555 558Right-handed 310
Helix 61
AG7
B
559 573Right-handed alpha
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There are 4 sheets in PDB entry 5CPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 419first strand
Strand 2
A
369 373parallel
Strand 3
A
289 295parallel
Strand 4
A
120 122parallel
Strand 5
A
83 87parallel
Strand 6
A
519 523parallel
Strand 7
A
465 468parallel
Strand 8
A
440 443parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 341first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
380 385anti-parallel
Strand 4
A
395 398anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 419first strand
Strand 2
B
369 373parallel
Strand 3
B
289 295parallel
Strand 4
B
120 122parallel
Strand 5
B
83 87parallel
Strand 6
B
519 523parallel
Strand 7
B
465 468parallel
Strand 8
B
440 443parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 341first strand
Strand 2
B
322 326anti-parallel
Strand 3
B
380 385anti-parallel
Strand 4
B
395 398anti-parallel
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