Analysis of interatomic Contacts of Structural Units in PDB entry:
5CPY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CPY entry

There are 5 chains in PDB entry 5CPY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 33	LYS 316
B	GLY 33	LYS 316
C	GLY 33	LYS 316
D	MET 34	LYS 316
E	GLY 33	VAL 178

There are 30 helices in PDB entry 5CPY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	73	Right-handed 310
Helix 2	AA2	A	91	95	Right-handed 310
Helix 3	AA3	A	131	137	Right-handed 310
Helix 4	AA4	A	192	198	Right-handed alpha
Helix 5	AA5	A	202	207	Right-handed 310
Helix 6	AA6	A	273	275	Right-handed 310
Helix 7	AA7	B	69	73	Right-handed 310
Helix 8	AA8	B	91	95	Right-handed 310
Helix 9	AA9	B	131	137	Right-handed 310
Helix 10	AB1	B	192	198	Right-handed alpha
Helix 11	AB2	B	202	207	Right-handed 310
Helix 12	AB3	B	273	275	Right-handed 310
Helix 13	AB4	C	69	73	Right-handed 310
Helix 14	AB5	C	91	95	Right-handed 310
Helix 15	AB6	C	131	137	Right-handed 310
Helix 16	AB7	C	192	198	Right-handed alpha
Helix 17	AB8	C	202	207	Right-handed 310
Helix 18	AB9	C	273	275	Right-handed 310
Helix 19	AC1	D	69	73	Right-handed 310
Helix 20	AC2	D	91	95	Right-handed 310
Helix 21	AC3	D	131	137	Right-handed 310
Helix 22	AC4	D	192	198	Right-handed alpha
Helix 23	AC5	D	202	207	Right-handed 310
Helix 24	AC6	D	273	275	Right-handed 310
Helix 25	AC7	E	69	73	Right-handed 310
Helix 26	AC8	E	91	95	Right-handed 310
Helix 27	AC9	E	131	137	Right-handed 310
Helix 28	AD1	E	192	198	Right-handed alpha
Helix 29	AD2	E	202	207	Right-handed 310
Helix 30	AD3	E	273	275	Right-handed 310

There are 30 sheets in PDB entry 5CPY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	304	316	anti-parallel
Strand 3	A	46	53	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	304	316	anti-parallel
Strand 3	A	117	129	anti-parallel
Strand 4	A	261	262	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	104	first strand
Strand 2	A	277	290	anti-parallel
Strand 3	A	297	301	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	104	first strand
Strand 2	A	277	290	anti-parallel
Strand 3	A	161	168	anti-parallel
Strand 4	A	237	244	anti-parallel
Strand 5	E	252	256	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	146	first strand
Strand 2	A	151	154	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	A	173	176	anti-parallel
Strand 3	A	227	229	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	256	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	161	168	anti-parallel
Strand 4	B	277	290	anti-parallel
Strand 5	B	99	104	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	256	first strand
Strand 2	B	237	244	anti-parallel
Strand 3	B	161	168	anti-parallel
Strand 4	B	277	290	anti-parallel
Strand 5	B	297	301	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	304	316	anti-parallel
Strand 3	B	46	53	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	304	316	anti-parallel
Strand 3	B	117	129	anti-parallel
Strand 4	B	261	262	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	146	first strand
Strand 2	B	151	154	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	215	first strand
Strand 2	B	173	176	anti-parallel
Strand 3	B	227	229	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	256	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	161	168	anti-parallel
Strand 4	C	277	290	anti-parallel
Strand 5	C	99	104	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	256	first strand
Strand 2	C	237	244	anti-parallel
Strand 3	C	161	168	anti-parallel
Strand 4	C	277	290	anti-parallel
Strand 5	C	297	301	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	39	first strand
Strand 2	C	304	316	anti-parallel
Strand 3	C	46	53	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	39	first strand
Strand 2	C	304	316	anti-parallel
Strand 3	C	117	129	anti-parallel
Strand 4	C	261	262	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	146	first strand
Strand 2	C	151	154	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	215	first strand
Strand 2	C	173	176	anti-parallel
Strand 3	C	227	229	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	256	first strand
Strand 2	D	237	244	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	277	290	anti-parallel
Strand 5	D	99	104	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	256	first strand
Strand 2	D	237	244	anti-parallel
Strand 3	D	161	168	anti-parallel
Strand 4	D	277	290	anti-parallel
Strand 5	D	297	301	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	304	315	anti-parallel
Strand 3	D	46	53	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	39	first strand
Strand 2	D	304	315	anti-parallel
Strand 3	D	117	129	anti-parallel
Strand 4	D	261	262	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	146	first strand
Strand 2	D	151	154	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	215	first strand
Strand 2	D	173	176	anti-parallel
Strand 3	D	227	229	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	256	first strand
Strand 2	E	237	244	anti-parallel
Strand 3	E	161	168	anti-parallel
Strand 4	E	277	290	anti-parallel
Strand 5	E	99	104	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	252	256	first strand
Strand 2	E	237	244	anti-parallel
Strand 3	E	161	168	anti-parallel
Strand 4	E	277	290	anti-parallel
Strand 5	E	297	301	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	39	first strand
Strand 2	E	304	316	anti-parallel
Strand 3	E	46	53	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	39	first strand
Strand 2	E	304	316	anti-parallel
Strand 3	E	117	129	anti-parallel
Strand 4	E	261	262	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	146	first strand
Strand 2	E	151	154	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	213	215	first strand
Strand 2	E	173	176	anti-parallel
Strand 3	E	227	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CPY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CPY