Analysis of interatomic Contacts of Structural Units in PDB entry:
5CQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CQ9 entry

There are 4 chains in PDB entry 5CQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 36ILE 319
B
 VAL 36ILE 319
C
 UNK 16UNK 24
D
 UNK 15UNK 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5CQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 45Right-handed alpha
Helix 2
AA2
A
47 62Right-handed alpha
Helix 3
AA3
A
77 90Right-handed alpha
Helix 4
AA4
A
95 97Right-handed 310
Helix 5
AA5
A
124 128Right-handed alpha
Helix 6
AA6
A
140 161Right-handed alpha
Helix 7
AA7
A
162 165Right-handed 310
Helix 8
AA8
A
169 179Right-handed alpha
Helix 9
AA9
A
179 191Right-handed alpha
Helix 10
AB1
A
208 215Right-handed alpha
Helix 11
AB2
A
216 220Right-handed 310
Helix 12
AB3
A
247 256Right-handed alpha
Helix 13
AB4
A
266 273Right-handed alpha
Helix 14
AB5
A
273 287Right-handed alpha
Helix 15
AB6
A
287 302Right-handed alpha
Helix 16
AB7
B
37 61Right-handed alpha
Helix 17
AB8
B
77 90Right-handed alpha
Helix 18
AB9
B
124 128Right-handed alpha
Helix 19
AC1
B
140 161Right-handed alpha
Helix 20
AC2
B
170 179Right-handed alpha
Helix 21
AC3
B
179 191Right-handed alpha
Helix 22
AC4
B
208 215Right-handed alpha
Helix 23
AC5
B
216 220Right-handed 310
Helix 24
AC6
B
224 228Right-handed 310
Helix 25
AC7
B
247 256Right-handed alpha
Helix 26
AC8
B
266 274Right-handed alpha
Helix 27
AC9
B
276 287Right-handed alpha
Helix 28
AD1
B
287 302Right-handed alpha
Helix 29
AD2
C
17 24Right-handed alpha
Helix 30
AD3
D
16 25Right-handed alpha
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There are 6 sheets in PDB entry 5CQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 103first strand
Strand 2
A
109 114anti-parallel
Strand 3
A
117 123anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
308 309parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 237first strand
Strand 2
A
240 245anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 103first strand
Strand 2
B
109 114anti-parallel
Strand 3
B
117 123anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 202first strand
Strand 2
B
308 309parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 237first strand
Strand 2
B
240 245anti-parallel
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