Analysis of interatomic Contacts of Structural Units in PDB entry:
5CQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CQF entry

There is 1 chain in PDB entry 5CQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 10GLU 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5CQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 35Right-handed alpha
Helix 2
AA2
A
37 42Right-handed 310
Helix 3
AA3
A
53 62Right-handed alpha
Helix 4
AA4
A
85 94Right-handed alpha
Helix 5
AA5
A
95 103Right-handed alpha
Helix 6
AA6
A
107 123Right-handed alpha
Helix 7
AA7
A
172 179Right-handed 310
Helix 8
AA8
A
188 196Right-handed alpha
Helix 9
AA9
A
210 224Right-handed alpha
Helix 10
AB1
A
237 241Right-handed 310
Helix 11
AB2
A
245 249Right-handed 310
Helix 12
AB3
A
251 262Right-handed alpha
Helix 13
AB4
A
263 278Right-handed alpha
Helix 14
AB5
A
283 300Right-handed alpha
Helix 15
AB6
A
355 365Right-handed 310
Helix 16
AB7
A
397 402Right-handed alpha
Helix 17
AB8
A
408 426Right-handed alpha
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There are 5 sheets in PDB entry 5CQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
44 47parallel
Strand 3
A
13 16parallel
Strand 4
A
160 163parallel
Strand 5
A
390 393parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 139first strand
Strand 2
A
144 151anti-parallel
Strand 3
A
154 158anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
342 345parallel
Strand 3
A
203 207parallel
Strand 4
A
228 232parallel
Strand 5
A
305 308parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
281 282parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 319first strand
Strand 2
A
322 329anti-parallel
Strand 3
A
335 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il