Analysis of interatomic Contacts of Structural Units in PDB entry:
5CQG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CQG entry

There are 2 chains in PDB entry 5CQG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 596
B
 MET 1ILE 596
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5CQG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
25 40Right-handed alpha
Helix 3
AA3
A
47 56Right-handed alpha
Helix 4
AA4
A
57 61Right-handed 310
Helix 5
AA5
A
63 78Right-handed alpha
Helix 6
AA6
A
89 92Right-handed 310
Helix 7
AA7
A
96 104Right-handed 310
Helix 8
AA8
A
107 109Right-handed 310
Helix 9
AA9
A
110 126Right-handed alpha
Helix 10
AB1
A
126 134Right-handed alpha
Helix 11
AB2
A
151 167Right-handed alpha
Helix 12
AB3
A
205 221Right-handed alpha
Helix 13
AB4
A
229 241Right-handed alpha
Helix 14
AB5
A
260 270Right-handed alpha
Helix 15
AB6
A
277 289Right-handed alpha
Helix 16
AB7
A
312 329Right-handed alpha
Helix 17
AB8
A
351 366Right-handed alpha
Helix 18
AB9
A
412 417Right-handed 310
Helix 19
AC1
A
430 440Right-handed alpha
Helix 20
AC2
A
441 448Right-handed 310
Helix 21
AC3
A
449 454Right-handed alpha
Helix 22
AC4
A
459 488Right-handed alpha
Helix 23
AC5
A
496 519Right-handed alpha
Helix 24
AC6
A
528 545Right-handed alpha
Helix 25
AC7
A
547 562Right-handed alpha
Helix 26
AC8
A
574 580Right-handed 310
Helix 27
AC9
A
582 587Right-handed alpha
Helix 28
AD1
B
8 12Right-handed 310
Helix 29
AD2
B
25 40Right-handed alpha
Helix 30
AD3
B
47 56Right-handed alpha
Helix 31
AD4
B
57 61Right-handed 310
Helix 32
AD5
B
63 79Right-handed alpha
Helix 33
AD6
B
89 92Right-handed 310
Helix 34
AD7
B
100 104Right-handed 310
Helix 35
AD8
B
107 109Right-handed 310
Helix 36
AD9
B
110 126Right-handed alpha
Helix 37
AE1
B
126 134Right-handed alpha
Helix 38
AE2
B
151 167Right-handed alpha
Helix 39
AE3
B
206 220Right-handed alpha
Helix 40
AE4
B
229 241Right-handed alpha
Helix 41
AE5
B
260 269Right-handed alpha
Helix 42
AE6
B
279 290Right-handed alpha
Helix 43
AE7
B
312 329Right-handed alpha
Helix 44
AE8
B
351 366Right-handed alpha
Helix 45
AE9
B
369 373Right-handed 310
Helix 46
AF1
B
412 417Right-handed 310
Helix 47
AF2
B
430 440Right-handed alpha
Helix 48
AF3
B
441 448Right-handed 310
Helix 49
AF4
B
449 454Right-handed alpha
Helix 50
AF5
B
459 488Right-handed alpha
Helix 51
AF6
B
496 519Right-handed alpha
Helix 52
AF7
B
528 545Right-handed alpha
Helix 53
AF8
B
547 562Right-handed alpha
Helix 54
AF9
B
574 579Right-handed 310
Helix 55
AG1
B
582 587Right-handed alpha
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There are 12 sheets in PDB entry 5CQG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
85 87anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
146 150anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
299 302anti-parallel
Strand 3
A
291 294anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 189first strand
Strand 2
A
192 198anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
246 251anti-parallel
Strand 4
A
374 375anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 389first strand
Strand 2
A
392 395anti-parallel
Strand 3
A
401 403anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
85 87anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 139first strand
Strand 2
B
146 150anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
299 302anti-parallel
Strand 3
B
291 294anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 188first strand
Strand 2
B
193 198anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 340first strand
Strand 2
B
344 349anti-parallel
Strand 3
B
246 251anti-parallel
Strand 4
B
374 375anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 389first strand
Strand 2
B
392 395anti-parallel
Strand 3
B
401 403anti-parallel
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