Analysis of interatomic Contacts of Structural Units in PDB entry:
5CR9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CR9 entry

There is 1 chain in PDB entry 5CR9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 40ALA 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5CR9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
68 76Right-handed alpha
Helix 2
AA2
A
77 79Right-handed 310
Helix 3
AA3
A
89 93Right-handed 310
Helix 4
AA4
A
94 103Right-handed alpha
Helix 5
AA5
A
120 126Right-handed alpha
Helix 6
AA6
A
140 146Right-handed alpha
Helix 7
AA7
A
154 158Right-handed 310
Helix 8
AA8
A
166 182Right-handed alpha
Helix 9
AA9
A
183 207Right-handed alpha
Helix 10
AB1
A
236 244Right-handed alpha
Helix 11
AB2
A
261 269Right-handed alpha
Helix 12
AB3
A
281 291Right-handed alpha
Helix 13
AB4
A
294 297Right-handed 310
Helix 14
AB5
A
298 303Right-handed alpha
Helix 15
AB6
A
312 314Right-handed 310
Helix 16
AB7
A
318 333Right-handed alpha
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There are 4 sheets in PDB entry 5CR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
50 54anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
61 63parallel
Strand 3
A
131 133parallel
Strand 4
A
150 152parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
215 220parallel
Strand 3
A
229 231anti-parallel
Strand 4
A
257 259anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
215 220parallel
Strand 3
A
272 277parallel
Strand 4
A
306 310parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il