Analysis of interatomic Contacts of Structural Units in PDB entry:
5CRA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CRA entry

There are 4 chains in PDB entry 5CRA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ASP 173
D
 MET 1GLY 75
B
 PRO 2ASP 173
C
 MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5CRA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 22Right-handed alpha
Helix 2
AA2
A
40 48Right-handed alpha
Helix 3
AA3
A
83 89Right-handed alpha
Helix 4
AA4
A
90 96Right-handed alpha
Helix 5
AA5
A
117 124Right-handed alpha
Helix 6
AA6
A
124 134Right-handed alpha
Helix 7
AA7
A
140 157Right-handed alpha
Helix 8
AA8
A
159 172Right-handed alpha
Helix 9
AA9
D
22 35Right-handed alpha
Helix 10
AB1
D
37 39Right-handed 310
Helix 11
AB2
D
56 60Right-handed 310
Helix 12
AB3
B
12 22Right-handed alpha
Helix 13
AB4
B
40 48Right-handed alpha
Helix 14
AB5
B
83 89Right-handed alpha
Helix 15
AB6
B
90 96Right-handed alpha
Helix 16
AB7
B
117 124Right-handed alpha
Helix 17
AB8
B
124 134Right-handed alpha
Helix 18
AB9
B
140 157Right-handed alpha
Helix 19
AC1
B
159 172Right-handed alpha
Helix 20
AC2
C
22 35Right-handed alpha
Helix 21
AC3
C
37 39Right-handed 310
Helix 22
AC4
C
56 60Right-handed 310
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There are 6 sheets in PDB entry 5CRA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
9 11anti-parallel
Strand 3
D
74 75anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
30 33anti-parallel
Strand 3
A
49 56parallel
Strand 4
A
64 70anti-parallel
Strand 5
A
75 79anti-parallel
Strand 6
A
103 106parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 7anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 45anti-parallel
Strand 5
D
48 49anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
9 11anti-parallel
Strand 3
C
74 75anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 38first strand
Strand 2
B
30 33anti-parallel
Strand 3
B
49 56parallel
Strand 4
B
64 70anti-parallel
Strand 5
B
75 79anti-parallel
Strand 6
B
103 106parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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