Analysis of interatomic Contacts of Structural Units in PDB entry:
5CRB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CRB entry

There are 2 chains in PDB entry 5CRB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 9LYS 200
B
 LYS 10LYS 200
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5CRB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 30Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
90 103Right-handed alpha
Helix 4
AA4
A
124 130Right-handed alpha
Helix 5
AA5
A
131 141Right-handed alpha
Helix 6
AA6
A
147 164Right-handed alpha
Helix 7
AA7
A
166 178Right-handed alpha
Helix 8
AA8
A
190 200Right-handed alpha
Helix 9
AA9
B
18 30Right-handed alpha
Helix 10
AB1
B
47 55Right-handed alpha
Helix 11
AB2
B
90 103Right-handed alpha
Helix 12
AB3
B
124 130Right-handed alpha
Helix 13
AB4
B
131 141Right-handed alpha
Helix 14
AB5
B
147 164Right-handed alpha
Helix 15
AB6
B
166 178Right-handed alpha
Helix 16
AB7
B
190 199Right-handed alpha
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There are 4 sheets in PDB entry 5CRB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
16 17anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
56 63parallel
Strand 4
A
71 77anti-parallel
Strand 5
A
82 86anti-parallel
Strand 6
A
110 113parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
16 17anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 45first strand
Strand 2
B
37 40anti-parallel
Strand 3
B
56 63parallel
Strand 4
B
71 77anti-parallel
Strand 5
B
82 86anti-parallel
Strand 6
B
110 113parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il