Analysis of interatomic Contacts of Structural Units in PDB entry:
5CRH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CRH entry

There are 2 chains in PDB entry 5CRH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1GLU 354
B
 GLN 1THR 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5CRH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 30Right-handed alpha
Helix 2
AA2
A
44 65Right-handed alpha
Helix 3
AA3
A
66 68Right-handed 310
Helix 4
AA4
A
80 88Right-handed alpha
Helix 5
AA5
A
111 124Right-handed alpha
Helix 6
AA6
A
131 141Right-handed alpha
Helix 7
AA7
A
157 171Right-handed alpha
Helix 8
AA8
A
181 189Right-handed alpha
Helix 9
AA9
A
214 225Right-handed alpha
Helix 10
AB1
A
234 236Right-handed 310
Helix 11
AB2
A
237 243Right-handed alpha
Helix 12
AB3
A
259 276Right-handed alpha
Helix 13
AB4
A
288 294Right-handed 310
Helix 14
AB5
A
295 304Right-handed alpha
Helix 15
AB6
A
335 348Right-handed alpha
Helix 16
AB7
B
22 29Right-handed alpha
Helix 17
AB8
B
45 65Right-handed alpha
Helix 18
AB9
B
66 68Right-handed 310
Helix 19
AC1
B
80 88Right-handed alpha
Helix 20
AC2
B
111 124Right-handed alpha
Helix 21
AC3
B
131 142Right-handed alpha
Helix 22
AC4
B
157 171Right-handed alpha
Helix 23
AC5
B
181 189Right-handed alpha
Helix 24
AC6
B
214 225Right-handed alpha
Helix 25
AC7
B
234 236Right-handed 310
Helix 26
AC8
B
237 244Right-handed alpha
Helix 27
AC9
B
259 276Right-handed alpha
Helix 28
AD1
B
288 294Right-handed 310
Helix 29
AD2
B
295 304Right-handed alpha
Helix 30
AD3
B
335 348Right-handed alpha
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There are 6 sheets in PDB entry 5CRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
70 76parallel
Strand 3
A
32 38parallel
Strand 4
A
95 99anti-parallel
Strand 5
A
102 106anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 130first strand
Strand 2
A
176 179parallel
Strand 3
A
147 151parallel
Strand 4
A
195 198anti-parallel
Strand 5
A
206 207anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
284 287parallel
Strand 3
A
249 254parallel
Strand 4
A
311 316anti-parallel
Strand 5
A
322 324anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 17first strand
Strand 2
B
70 76parallel
Strand 3
B
32 38parallel
Strand 4
B
95 99anti-parallel
Strand 5
B
102 106anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
176 179parallel
Strand 3
B
147 151parallel
Strand 4
B
195 198anti-parallel
Strand 5
B
206 207anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
230 232first strand
Strand 2
B
284 287parallel
Strand 3
B
249 254parallel
Strand 4
B
311 316anti-parallel
Strand 5
B
322 324anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il