Analysis of interatomic Contacts of Structural Units in PDB entry:
5CS4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CS4 entry

There are 2 chains in PDB entry 5CS4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1036PRO 1495
B
 SER 1036PRO 1495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5CS4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1036 1053Right-handed alpha
Helix 2
AA2
A
1068 1077Right-handed alpha
Helix 3
AA3
A
1085 1091Right-handed 310
Helix 4
AA4
A
1094 1110Right-handed alpha
Helix 5
AA5
A
1185 1195Right-handed alpha
Helix 6
AA6
A
1234 1255Right-handed alpha
Helix 7
AA7
A
1287 1290Right-handed 310
Helix 8
AA8
A
1293 1300Right-handed 310
Helix 9
AA9
A
1302 1306Right-handed 310
Helix 10
AB1
A
1352 1373Right-handed alpha
Helix 11
AB2
A
1396 1404Right-handed alpha
Helix 12
AB3
A
1408 1410Right-handed 310
Helix 13
AB4
A
1411 1418Right-handed alpha
Helix 14
AB5
A
1490 1494Right-handed 310
Helix 15
AB6
B
1037 1053Right-handed alpha
Helix 16
AB7
B
1068 1077Right-handed alpha
Helix 17
AB8
B
1085 1089Right-handed 310
Helix 18
AB9
B
1094 1110Right-handed alpha
Helix 19
AC1
B
1182 1185Right-handed 310
Helix 20
AC2
B
1186 1195Right-handed alpha
Helix 21
AC3
B
1236 1256Right-handed alpha
Helix 22
AC4
B
1293 1300Right-handed 310
Helix 23
AC5
B
1301 1306Right-handed 310
Helix 24
AC6
B
1352 1375Right-handed alpha
Helix 25
AC7
B
1396 1405Right-handed alpha
Helix 26
AC8
B
1408 1410Right-handed 310
Helix 27
AC9
B
1411 1419Right-handed alpha
Helix 28
AD1
B
1490 1494Right-handed 310
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There are 6 sheets in PDB entry 5CS4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1122first strand
Strand 2
A
1127 1134anti-parallel
Strand 3
A
1174 1182anti-parallel
Strand 4
A
1220 1228parallel
Strand 5
A
1258 1265parallel
Strand 6
A
1274 1279anti-parallel
Strand 7
A
1284 1285anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1308 1312first strand
Strand 2
A
1320 1327anti-parallel
Strand 3
A
1334 1342anti-parallel
Strand 4
A
1383 1389parallel
Strand 5
A
1420 1426parallel
Strand 6
A
1437 1445anti-parallel
Strand 7
A
1428 1430anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1308 1312first strand
Strand 2
A
1320 1327anti-parallel
Strand 3
A
1334 1342anti-parallel
Strand 4
A
1383 1389parallel
Strand 5
A
1420 1426parallel
Strand 6
A
1437 1445anti-parallel
Strand 7
A
1453 1461anti-parallel
Strand 8
A
1467 1471anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1114 1122first strand
Strand 2
B
1127 1134anti-parallel
Strand 3
B
1174 1178anti-parallel
Strand 4
B
1220 1224parallel
Strand 5
B
1258 1265parallel
Strand 6
B
1274 1279anti-parallel
Strand 7
B
1284 1285anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1308 1313first strand
Strand 2
B
1320 1327anti-parallel
Strand 3
B
1334 1342anti-parallel
Strand 4
B
1383 1393parallel
Strand 5
B
1420 1430parallel
Strand 6
B
1437 1445anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1459 1460first strand
Strand 2
B
1468 1469anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il