Analysis of interatomic Contacts of Structural Units in PDB entry:
5CSK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CSK entry

There are 2 chains in PDB entry 5CSK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 26	LYS 2187
B	LEU 28	SER 2193

There are162 helices in PDB entry 5CSK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	33	Right-handed 310
Helix 2	AA2	A	37	41	Right-handed 310
Helix 3	AA3	A	44	53	Right-handed alpha
Helix 4	AA4	A	67	87	Right-handed alpha
Helix 5	AA5	A	99	105	Right-handed alpha
Helix 6	AA6	A	107	113	Right-handed alpha
Helix 7	AA7	A	123	127	Right-handed 310
Helix 8	AA8	A	130	142	Right-handed alpha
Helix 9	AA9	A	157	166	Right-handed alpha
Helix 10	AB1	A	176	183	Right-handed alpha
Helix 11	AB2	A	185	196	Right-handed alpha
Helix 12	AB3	A	223	230	Right-handed alpha
Helix 13	AB4	A	234	246	Right-handed alpha
Helix 14	AB5	A	267	282	Right-handed alpha
Helix 15	AB6	A	338	357	Right-handed alpha
Helix 16	AB7	A	387	396	Right-handed alpha
Helix 17	AB8	A	398	408	Right-handed alpha
Helix 18	AB9	A	411	414	Right-handed 310
Helix 19	AC1	A	415	422	Right-handed alpha
Helix 20	AC2	A	438	445	Right-handed alpha
Helix 21	AC3	A	515	530	Right-handed alpha
Helix 22	AC4	A	539	549	Right-handed alpha
Helix 23	AC5	A	549	554	Right-handed alpha
Helix 24	AC6	A	560	568	Right-handed alpha
Helix 25	AC7	A	576	607	Right-handed alpha
Helix 26	AC8	A	612	616	Right-handed 310
Helix 27	AC9	A	797	814	Right-handed alpha
Helix 28	AD1	A	821	834	Right-handed alpha
Helix 29	AD2	A	837	851	Right-handed alpha
Helix 30	AD3	A	855	870	Right-handed alpha
Helix 31	AD4	A	877	890	Right-handed alpha
Helix 32	AD5	A	899	904	Right-handed alpha
Helix 33	AD6	A	904	916	Right-handed alpha
Helix 34	AD7	A	917	938	Right-handed alpha
Helix 35	AD8	A	939	941	Right-handed 310
Helix 36	AD9	A	946	958	Right-handed alpha
Helix 37	AE1	A	961	974	Right-handed alpha
Helix 38	AE2	A	974	996	Right-handed alpha
Helix 39	AE3	A	996	1003	Right-handed alpha
Helix 40	AE4	A	1003	1010	Right-handed alpha
Helix 41	AE5	A	1018	1033	Right-handed alpha
Helix 42	AE6	A	1036	1050	Right-handed alpha
Helix 43	AE7	A	1069	1077	Right-handed alpha
Helix 44	AE8	A	1082	1087	Right-handed alpha
Helix 45	AE9	A	1088	1092	Right-handed 310
Helix 46	AF1	A	1094	1110	Right-handed alpha
Helix 47	AF2	A	1182	1184	Right-handed 310
Helix 48	AF3	A	1185	1195	Right-handed alpha
Helix 49	AF4	A	1234	1255	Right-handed alpha
Helix 50	AF5	A	1293	1300	Right-handed alpha
Helix 51	AF6	A	1301	1306	Right-handed 310
Helix 52	AF7	A	1352	1374	Right-handed alpha
Helix 53	AF8	A	1396	1405	Right-handed alpha
Helix 54	AF9	A	1406	1418	Right-handed alpha
Helix 55	AG1	A	1493	1504	Right-handed alpha
Helix 56	AG2	A	1510	1527	Right-handed alpha
Helix 57	AG3	A	1533	1535	Right-handed 310
Helix 58	AG4	A	1597	1615	Right-handed alpha
Helix 59	AG5	A	1632	1636	Right-handed 310
Helix 60	AG6	A	1660	1670	Right-handed alpha
Helix 61	AG7	A	1701	1722	Right-handed alpha
Helix 62	AG8	A	1734	1743	Right-handed alpha
Helix 63	AG9	A	1758	1767	Right-handed alpha
Helix 64	AH1	A	1774	1779	Right-handed alpha
Helix 65	AH2	A	1779	1784	Right-handed alpha
Helix 66	AH3	A	1795	1808	Right-handed alpha
Helix 67	AH4	A	1842	1848	Right-handed alpha
Helix 68	AH5	A	1925	1942	Right-handed alpha
Helix 69	AH6	A	1959	1965	Right-handed alpha
Helix 70	AH7	A	1966	1980	Right-handed alpha
Helix 71	AH8	A	1997	2001	Right-handed alpha
Helix 72	AH9	A	2002	2004	Right-handed 310
Helix 73	AI1	A	2026	2035	Right-handed alpha
Helix 74	AI2	A	2036	2048	Right-handed alpha
Helix 75	AI3	A	2048	2061	Right-handed alpha
Helix 76	AI4	A	2064	2096	Right-handed alpha
Helix 77	AI5	A	2099	2106	Right-handed alpha
Helix 78	AI6	A	2114	2116	Right-handed 310
Helix 79	AI7	A	2117	2139	Right-handed alpha
Helix 80	AI8	A	2147	2158	Right-handed alpha
Helix 81	AI9	A	2167	2178	Right-handed alpha
Helix 82	AJ1	A	2180	2187	Right-handed alpha
Helix 83	AJ2	B	44	53	Right-handed alpha
Helix 84	AJ3	B	67	87	Right-handed alpha
Helix 85	AJ4	B	99	105	Right-handed alpha
Helix 86	AJ5	B	107	113	Right-handed alpha
Helix 87	AJ6	B	123	127	Right-handed 310
Helix 88	AJ7	B	130	142	Right-handed alpha
Helix 89	AJ8	B	157	166	Right-handed alpha
Helix 90	AJ9	B	176	183	Right-handed alpha
Helix 91	AK1	B	185	196	Right-handed alpha
Helix 92	AK2	B	223	230	Right-handed alpha
Helix 93	AK3	B	234	246	Right-handed alpha
Helix 94	AK4	B	267	282	Right-handed alpha
Helix 95	AK5	B	338	357	Right-handed alpha
Helix 96	AK6	B	387	396	Right-handed alpha
Helix 97	AK7	B	398	408	Right-handed alpha
Helix 98	AK8	B	411	414	Right-handed 310
Helix 99	AK9	B	415	422	Right-handed alpha
Helix 100	AL1	B	440	445	Right-handed alpha
Helix 101	AL2	B	515	529	Right-handed alpha
Helix 102	AL3	B	539	548	Right-handed alpha
Helix 103	AL4	B	549	555	Right-handed alpha
Helix 104	AL5	B	560	568	Right-handed alpha
Helix 105	AL6	B	576	606	Right-handed alpha
Helix 106	AL7	B	611	616	Right-handed 310
Helix 107	AL8	B	797	815	Right-handed alpha
Helix 108	AL9	B	821	834	Right-handed alpha
Helix 109	AM1	B	836	851	Right-handed alpha
Helix 110	AM2	B	855	869	Right-handed alpha
Helix 111	AM3	B	877	889	Right-handed alpha
Helix 112	AM4	B	899	904	Right-handed alpha
Helix 113	AM5	B	904	915	Right-handed alpha
Helix 114	AM6	B	917	938	Right-handed alpha
Helix 115	AM7	B	939	941	Right-handed 310
Helix 116	AM8	B	946	958	Right-handed alpha
Helix 117	AM9	B	961	973	Right-handed alpha
Helix 118	AN1	B	974	996	Right-handed alpha
Helix 119	AN2	B	996	1012	Right-handed alpha
Helix 120	AN3	B	1018	1031	Right-handed alpha
Helix 121	AN4	B	1036	1053	Right-handed alpha
Helix 122	AN5	B	1072	1077	Right-handed alpha
Helix 123	AN6	B	1082	1087	Right-handed alpha
Helix 124	AN7	B	1088	1092	Right-handed 310
Helix 125	AN8	B	1094	1110	Right-handed alpha
Helix 126	AN9	B	1182	1184	Right-handed 310
Helix 127	AO1	B	1185	1195	Right-handed alpha
Helix 128	AO2	B	1234	1256	Right-handed alpha
Helix 129	AO3	B	1293	1301	Right-handed alpha
Helix 130	AO4	B	1302	1306	Right-handed 310
Helix 131	AO5	B	1352	1374	Right-handed alpha
Helix 132	AO6	B	1396	1404	Right-handed alpha
Helix 133	AO7	B	1406	1418	Right-handed alpha
Helix 134	AO8	B	1493	1504	Right-handed alpha
Helix 135	AO9	B	1507	1509	Right-handed 310
Helix 136	AP1	B	1510	1527	Right-handed alpha
Helix 137	AP2	B	1597	1615	Right-handed alpha
Helix 138	AP3	B	1632	1636	Right-handed 310
Helix 139	AP4	B	1648	1652	Right-handed 310
Helix 140	AP5	B	1659	1670	Right-handed alpha
Helix 141	AP6	B	1671	1673	Right-handed 310
Helix 142	AP7	B	1701	1720	Right-handed alpha
Helix 143	AP8	B	1734	1744	Right-handed alpha
Helix 144	AP9	B	1758	1766	Right-handed alpha
Helix 145	AQ1	B	1774	1779	Right-handed alpha
Helix 146	AQ2	B	1779	1784	Right-handed alpha
Helix 147	AQ3	B	1795	1808	Right-handed alpha
Helix 148	AQ4	B	1842	1848	Right-handed alpha
Helix 149	AQ5	B	1925	1942	Right-handed alpha
Helix 150	AQ6	B	1959	1965	Right-handed alpha
Helix 151	AQ7	B	1966	1980	Right-handed alpha
Helix 152	AQ8	B	1996	2001	Right-handed alpha
Helix 153	AQ9	B	2002	2008	Right-handed 310
Helix 154	AR1	B	2026	2035	Right-handed alpha
Helix 155	AR2	B	2036	2048	Right-handed alpha
Helix 156	AR3	B	2048	2058	Right-handed alpha
Helix 157	AR4	B	2069	2096	Right-handed alpha
Helix 158	AR5	B	2099	2107	Right-handed alpha
Helix 159	AR6	B	2117	2141	Right-handed alpha
Helix 160	AR7	B	2147	2157	Right-handed alpha
Helix 161	AR8	B	2167	2177	Right-handed alpha
Helix 162	AR9	B	2180	2188	Right-handed alpha

There are 39 sheets in PDB entry 5CSK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	118	first strand
Strand 2	A	93	98	parallel
Strand 3	A	61	64	parallel
Strand 4	A	145	147	parallel
Strand 5	A	171	172	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	265	first strand
Strand 2	A	249	253	anti-parallel
Strand 3	A	287	291	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	318	first strand
Strand 2	A	299	305	anti-parallel
Strand 3	A	360	361	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	318	first strand
Strand 2	A	299	305	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	374	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	323	first strand
Strand 2	A	326	327	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	332	first strand
Strand 2	A	453	460	anti-parallel
Strand 3	A	505	513	anti-parallel
Strand 4	A	488	490	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	498	first strand
Strand 2	A	473	479	anti-parallel
Strand 3	A	531	534	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	625	first strand
Strand 2	A	628	638	anti-parallel
Strand 3	A	641	644	anti-parallel
Strand 4	A	651	653	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	663	666	first strand
Strand 2	A	671	678	anti-parallel
Strand 3	A	682	687	anti-parallel
Strand 4	A	691	695	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1114	1120	first strand
Strand 2	A	1129	1134	anti-parallel
Strand 3	A	1173	1180	anti-parallel
Strand 4	A	1220	1226	parallel
Strand 5	A	1258	1265	parallel
Strand 6	A	1274	1279	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1308	1309	first strand
Strand 2	A	1320	1327	anti-parallel
Strand 3	A	1312	1313	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1308	1309	first strand
Strand 2	A	1320	1327	anti-parallel
Strand 3	A	1334	1342	anti-parallel
Strand 4	A	1383	1393	parallel
Strand 5	A	1420	1430	parallel
Strand 6	A	1437	1445	anti-parallel
Strand 7	A	1453	1461	anti-parallel
Strand 8	A	1467	1469	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1550	1552	first strand
Strand 2	A	1537	1544	anti-parallel
Strand 3	A	1564	1573	anti-parallel
Strand 4	A	1576	1587	anti-parallel
Strand 5	A	1618	1622	parallel
Strand 6	A	1724	1728	parallel
Strand 7	A	1746	1749	parallel
Strand 8	A	1791	1793	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1640	1643	first strand
Strand 2	A	1653	1659	anti-parallel
Strand 3	A	1685	1693	anti-parallel
Strand 4	A	1675	1682	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1732	1733	first strand
Strand 2	A	1754	1755	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1849	1852	first strand
Strand 2	A	1855	1858	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1867	1869	first strand
Strand 2	A	1878	1884	anti-parallel
Strand 3	A	1887	1893	anti-parallel
Strand 4	A	1947	1949	parallel
Strand 5	A	1985	1989	parallel
Strand 6	A	2012	2017	parallel
Strand 7	A	2111	2113	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1899	1903	first strand
Strand 2	A	1915	1919	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1923	1924	first strand
Strand 2	A	1955	1956	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1994	1996	first strand
Strand 2	A	2021	2023	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	93	98	parallel
Strand 3	B	61	64	parallel
Strand 4	B	145	147	parallel
Strand 5	B	171	172	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	220	221	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	265	first strand
Strand 2	B	249	253	anti-parallel
Strand 3	B	287	291	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	318	first strand
Strand 2	B	299	305	anti-parallel
Strand 3	B	360	365	anti-parallel
Strand 4	B	379	381	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	B	326	327	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	332	first strand
Strand 2	B	454	460	anti-parallel
Strand 3	B	505	510	anti-parallel
Strand 4	B	487	490	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	498	first strand
Strand 2	B	473	479	anti-parallel
Strand 3	B	531	534	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	618	624	first strand
Strand 2	B	629	638	anti-parallel
Strand 3	B	641	645	anti-parallel
Strand 4	B	650	657	anti-parallel
Strand 5	B	663	666	anti-parallel
Strand 6	B	671	675	anti-parallel
Strand 7	B	686	687	anti-parallel
Strand 8	B	690	691	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	683	first strand
Strand 2	B	694	695	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1114	1121	first strand
Strand 2	B	1128	1134	anti-parallel
Strand 3	B	1174	1180	anti-parallel
Strand 4	B	1220	1226	parallel
Strand 5	B	1258	1265	parallel
Strand 6	B	1274	1278	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1155	1156	first strand
Strand 2	B	1383	1393	anti-parallel
Strand 3	B	1334	1342	parallel
Strand 4	B	1321	1327	anti-parallel
Strand 5	B	1312	1313	anti-parallel

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There are 8 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1308	1309	first strand
Strand 2	B	1321	1327	anti-parallel
Strand 3	B	1334	1342	anti-parallel
Strand 4	B	1383	1393	parallel
Strand 5	B	1420	1430	parallel
Strand 6	B	1437	1445	anti-parallel
Strand 7	B	1453	1461	anti-parallel
Strand 8	B	1467	1471	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1550	1553	first strand
Strand 2	B	1537	1544	anti-parallel
Strand 3	B	1564	1571	anti-parallel
Strand 4	B	1580	1587	anti-parallel
Strand 5	B	1618	1622	parallel
Strand 6	B	1724	1728	parallel
Strand 7	B	1745	1749	parallel
Strand 8	B	1791	1793	parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1640	1641	first strand
Strand 2	B	1656	1658	anti-parallel
Strand 3	B	1686	1693	anti-parallel
Strand 4	B	1675	1681	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1732	1733	first strand
Strand 2	B	1754	1755	parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1849	1852	first strand
Strand 2	B	1855	1858	anti-parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1867	1869	first strand
Strand 2	B	1877	1884	anti-parallel
Strand 3	B	1887	1894	anti-parallel
Strand 4	B	1947	1950	parallel
Strand 5	B	1985	1989	parallel
Strand 6	B	2014	2017	parallel
Strand 7	B	2111	2113	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1899	1903	first strand
Strand 2	B	1915	1919	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1923	1924	first strand
Strand 2	B	1955	1956	parallel

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Analysis of interatomic Contacts of Structural Units in PDB entry: 5CSK

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CSK