Analysis of interatomic Contacts of Structural Units in PDB entry:
5CTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CTM entry

There are 4 chains in PDB entry 5CTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 59PHE 103
A
 VAL 105VAL 291
B
 ALA 59PHE 103
B
 VAL 105SER 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 5CTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
64 68Right-handed 310
Helix 2
AA2
A
89 95Right-handed alpha
Helix 3
AA3
A
99 102Right-handed 310
Helix 4
AA4
A
103 114Right-handed alpha
Helix 5
AA5
A
133 137Right-handed 310
Helix 6
AA6
A
142 148Right-handed alpha
Helix 7
AA7
A
150 173Right-handed alpha
Helix 8
AA8
A
196 209Right-handed alpha
Helix 9
AA9
A
215 226Right-handed alpha
Helix 10
AB1
A
269 284Right-handed alpha
Helix 11
AB2
B
64 68Right-handed 310
Helix 12
AB3
B
89 94Right-handed alpha
Helix 13
AB4
B
99 102Right-handed 310
Helix 14
AB5
B
103 114Right-handed alpha
Helix 15
AB6
B
133 137Right-handed 310
Helix 16
AB7
B
142 148Right-handed alpha
Helix 17
AB8
B
150 173Right-handed alpha
Helix 18
AB9
B
196 209Right-handed alpha
Helix 19
AC1
B
215 226Right-handed alpha
Helix 20
AC2
B
269 284Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5CTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 88first strand
Strand 2
A
73 79anti-parallel
Strand 3
A
258 267anti-parallel
Strand 4
A
246 255anti-parallel
Strand 5
A
234 243anti-parallel
Strand 6
A
227 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
140 141anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
73 79anti-parallel
Strand 3
B
258 267anti-parallel
Strand 4
B
246 255anti-parallel
Strand 5
B
234 243anti-parallel
Strand 6
B
227 231anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
140 141anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il