Analysis of interatomic Contacts of Structural Units in PDB entry:
5CTV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CTV entry

There are 4 chains in PDB entry 5CTV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1ILE 174
C
 ALA 12ALA 12
C
 LYS 14LYS 14
E
 ALA 23ALA 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 5CTV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 45Right-handed alpha
Helix 2
AA2
A
46 50Right-handed 310
Helix 3
AA3
A
76 80Right-handed 310
Helix 4
AA4
A
94 117Right-handed alpha
Helix 5
AA5
A
133 140Right-handed alpha
Helix 6
AA6
A
150 157Right-handed alpha
Helix 7
AA7
A
160 171Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5CTV.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
54 57anti-parallel
Strand 3
A
82 88parallel
Strand 4
A
22 27parallel
Strand 5
A
129 132parallel
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