Analysis of interatomic Contacts of Structural Units in PDB entry:
5CU7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CU7 entry

There are 2 chains in PDB entry 5CU7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 21GLU 425
B
 GLN 21GLU 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5CU7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 27Right-handed alpha
Helix 2
AA2
A
28 32Right-handed 310
Helix 3
AA3
A
67 83Right-handed alpha
Helix 4
AA4
A
87 105Right-handed alpha
Helix 5
AA5
A
112 130Right-handed alpha
Helix 6
AA6
A
131 135Right-handed 310
Helix 7
AA7
A
147 165Right-handed alpha
Helix 8
AA8
A
178 183Right-handed alpha
Helix 9
AA9
A
184 187Right-handed 310
Helix 10
AB1
A
188 198Right-handed alpha
Helix 11
AB2
A
199 212Right-handed alpha
Helix 12
AB3
A
213 220Right-handed alpha
Helix 13
AB4
A
224 228Right-handed 310
Helix 14
AB5
A
229 247Right-handed alpha
Helix 15
AB6
A
248 250Right-handed 310
Helix 16
AB7
A
256 260Right-handed 310
Helix 17
AB8
A
261 281Right-handed alpha
Helix 18
AB9
A
283 287Right-handed 310
Helix 19
AC1
A
288 293Right-handed alpha
Helix 20
AC2
A
294 311Right-handed alpha
Helix 21
AC3
A
323 335Right-handed alpha
Helix 22
AC4
A
345 347Right-handed 310
Helix 23
AC5
A
348 353Right-handed alpha
Helix 24
AC6
A
354 359Right-handed alpha
Helix 25
AC7
A
402 423Right-handed alpha
Helix 26
AC8
B
22 27Right-handed alpha
Helix 27
AC9
B
28 32Right-handed 310
Helix 28
AD1
B
67 83Right-handed alpha
Helix 29
AD2
B
87 105Right-handed alpha
Helix 30
AD3
B
112 130Right-handed alpha
Helix 31
AD4
B
131 135Right-handed 310
Helix 32
AD5
B
147 165Right-handed alpha
Helix 33
AD6
B
178 183Right-handed alpha
Helix 34
AD7
B
183 188Right-handed alpha
Helix 35
AD8
B
188 198Right-handed alpha
Helix 36
AD9
B
199 212Right-handed alpha
Helix 37
AE1
B
213 222Right-handed alpha
Helix 38
AE2
B
224 228Right-handed 310
Helix 39
AE3
B
229 247Right-handed alpha
Helix 40
AE4
B
248 250Right-handed 310
Helix 41
AE5
B
256 260Right-handed 310
Helix 42
AE6
B
261 281Right-handed alpha
Helix 43
AE7
B
283 287Right-handed 310
Helix 44
AE8
B
288 293Right-handed alpha
Helix 45
AE9
B
294 310Right-handed alpha
Helix 46
AF1
B
323 335Right-handed alpha
Helix 47
AF2
B
345 347Right-handed 310
Helix 48
AF3
B
348 353Right-handed alpha
Helix 49
AF4
B
354 359Right-handed alpha
Helix 50
AF5
B
402 423Right-handed alpha
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There are 4 sheets in PDB entry 5CU7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 174first strand
Strand 2
A
139 144parallel
Strand 3
A
317 322parallel
Strand 4
A
52 58parallel
Strand 5
A
364 371anti-parallel
Strand 6
A
377 383anti-parallel
Strand 7
A
386 387anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 174first strand
Strand 2
A
139 144parallel
Strand 3
A
317 322parallel
Strand 4
A
52 58parallel
Strand 5
A
364 371anti-parallel
Strand 6
A
377 383anti-parallel
Strand 7
A
399 401anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 174first strand
Strand 2
B
139 144parallel
Strand 3
B
317 322parallel
Strand 4
B
52 58parallel
Strand 5
B
364 371anti-parallel
Strand 6
B
377 383anti-parallel
Strand 7
B
386 387anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 174first strand
Strand 2
B
139 144parallel
Strand 3
B
317 322parallel
Strand 4
B
52 58parallel
Strand 5
B
364 371anti-parallel
Strand 6
B
377 383anti-parallel
Strand 7
B
399 401anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il