Analysis of interatomic Contacts of Structural Units in PDB entry:
5CUX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CUX entry

There are 2 chains in PDB entry 5CUX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 146ILE 408
B
 PHE 152ILE 408
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5CUX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
285 287Right-handed 310
Helix 2
AA2
A
340 344Right-handed 310
Helix 3
AA3
A
346 348Right-handed 310
Helix 4
AA4
A
349 354Right-handed alpha
Helix 5
AA5
A
356 368Right-handed alpha
Helix 6
AA6
A
369 373Right-handed 310
Helix 7
AA7
A
381 383Right-handed 310
Helix 8
AA8
A
388 408Right-handed alpha
Helix 9
AA9
B
285 287Right-handed 310
Helix 10
AB1
B
346 348Right-handed 310
Helix 11
AB2
B
349 354Right-handed alpha
Helix 12
AB3
B
356 368Right-handed alpha
Helix 13
AB4
B
369 373Right-handed 310
Helix 14
AB5
B
381 383Right-handed 310
Helix 15
AB6
B
388 408Right-handed alpha
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There are 8 sheets in PDB entry 5CUX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
182 189anti-parallel
Strand 3
A
166 173anti-parallel
Strand 4
B
212 213parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
B
166 173parallel
Strand 3
B
182 189anti-parallel
Strand 4
B
195 198anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
B
166 173parallel
Strand 3
B
182 189anti-parallel
Strand 4
B
249 251anti-parallel
Strand 5
B
238 240anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 379first strand
Strand 2
A
385 387first strand
Strand 3
A
224 230first strand
Strand 4
A
269 273anti-parallel
Strand 5
A
295 299anti-parallel
Strand 6
A
326 335parallel
Strand 7
A
310 323anti-parallel
Strand 8
A
385 387anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
249 251anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 284first strand
Strand 2
A
288 289anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 379first strand
Strand 2
B
385 387first strand
Strand 3
B
224 230first strand
Strand 4
B
269 272anti-parallel
Strand 5
B
296 299anti-parallel
Strand 6
B
326 335parallel
Strand 7
B
310 323anti-parallel
Strand 8
B
385 387anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 284first strand
Strand 2
B
288 289anti-parallel
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