Analysis of interatomic Contacts of Structural Units in PDB entry:
5CUY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CUY entry

There are 4 chains in PDB entry 5CUY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 18	ASN 409
B	ALA 20	LYS 410
C	ALA 20	ARG 411
D	GLN 17	GLY 412

There are 64 helices in PDB entry 5CUY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	25	Right-handed alpha
Helix 2	AA2	A	28	34	Right-handed alpha
Helix 3	AA3	A	41	45	Right-handed 310
Helix 4	AA4	A	51	58	Right-handed alpha
Helix 5	AA5	A	60	68	Right-handed alpha
Helix 6	AA6	A	73	89	Right-handed alpha
Helix 7	AA7	A	97	108	Right-handed alpha
Helix 8	AA8	A	113	125	Right-handed alpha
Helix 9	AA9	A	132	143	Right-handed alpha
Helix 10	AB1	A	199	204	Right-handed alpha
Helix 11	AB2	A	340	344	Right-handed 310
Helix 12	AB3	A	346	348	Right-handed 310
Helix 13	AB4	A	349	354	Right-handed alpha
Helix 14	AB5	A	356	368	Right-handed alpha
Helix 15	AB6	A	369	373	Right-handed 310
Helix 16	AB7	A	381	384	Right-handed 310
Helix 17	AB8	A	387	409	Right-handed alpha
Helix 18	AB9	B	21	25	Right-handed alpha
Helix 19	AC1	B	28	34	Right-handed alpha
Helix 20	AC2	B	41	45	Right-handed 310
Helix 21	AC3	B	51	58	Right-handed alpha
Helix 22	AC4	B	60	68	Right-handed alpha
Helix 23	AC5	B	73	87	Right-handed alpha
Helix 24	AC6	B	97	108	Right-handed alpha
Helix 25	AC7	B	113	124	Right-handed alpha
Helix 26	AC8	B	132	143	Right-handed alpha
Helix 27	AC9	B	340	344	Right-handed 310
Helix 28	AD1	B	346	348	Right-handed 310
Helix 29	AD2	B	349	354	Right-handed alpha
Helix 30	AD3	B	356	368	Right-handed alpha
Helix 31	AD4	B	381	384	Right-handed 310
Helix 32	AD5	B	388	410	Right-handed alpha
Helix 33	AD6	C	21	25	Right-handed alpha
Helix 34	AD7	C	28	34	Right-handed alpha
Helix 35	AD8	C	41	45	Right-handed 310
Helix 36	AD9	C	51	58	Right-handed alpha
Helix 37	AE1	C	60	68	Right-handed alpha
Helix 38	AE2	C	73	88	Right-handed alpha
Helix 39	AE3	C	97	108	Right-handed alpha
Helix 40	AE4	C	113	125	Right-handed alpha
Helix 41	AE5	C	132	141	Right-handed alpha
Helix 42	AE6	C	340	344	Right-handed 310
Helix 43	AE7	C	346	348	Right-handed 310
Helix 44	AE8	C	349	354	Right-handed alpha
Helix 45	AE9	C	356	368	Right-handed alpha
Helix 46	AF1	C	369	373	Right-handed 310
Helix 47	AF2	C	381	384	Right-handed 310
Helix 48	AF3	C	388	411	Right-handed alpha
Helix 49	AF4	D	19	25	Right-handed alpha
Helix 50	AF5	D	28	34	Right-handed alpha
Helix 51	AF6	D	41	45	Right-handed 310
Helix 52	AF7	D	51	58	Right-handed alpha
Helix 53	AF8	D	60	68	Right-handed alpha
Helix 54	AF9	D	73	87	Right-handed alpha
Helix 55	AG1	D	97	108	Right-handed alpha
Helix 56	AG2	D	113	125	Right-handed alpha
Helix 57	AG3	D	132	143	Right-handed alpha
Helix 58	AG4	D	340	344	Right-handed 310
Helix 59	AG5	D	346	348	Right-handed 310
Helix 60	AG6	D	349	354	Right-handed alpha
Helix 61	AG7	D	356	368	Right-handed alpha
Helix 62	AG8	D	369	373	Right-handed 310
Helix 63	AG9	D	381	384	Right-handed 310
Helix 64	AH1	D	388	411	Right-handed alpha

There are 18 sheets in PDB entry 5CUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	198	first strand
Strand 2	A	182	189	anti-parallel
Strand 3	A	166	173	anti-parallel
Strand 4	B	212	213	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	B	166	173	parallel
Strand 3	B	182	189	anti-parallel
Strand 4	B	195	198	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	B	166	173	parallel
Strand 3	B	182	189	anti-parallel
Strand 4	B	249	251	anti-parallel
Strand 5	B	238	240	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	326	335	parallel
Strand 3	A	296	299	parallel
Strand 4	A	269	272	anti-parallel
Strand 5	A	224	230	anti-parallel
Strand 6	A	310	322	anti-parallel
Strand 7	A	378	379	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	290	first strand
Strand 2	A	326	335	parallel
Strand 3	A	310	322	anti-parallel
Strand 4	A	378	379	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	240	first strand
Strand 2	A	249	251	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	254	first strand
Strand 2	A	257	258	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	379	first strand
Strand 2	B	386	387	first strand
Strand 3	B	224	230	first strand
Strand 4	B	269	272	anti-parallel
Strand 5	B	296	299	anti-parallel
Strand 6	B	327	335	parallel
Strand 7	B	310	322	anti-parallel
Strand 8	B	386	387	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	257	258	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	198	first strand
Strand 2	C	182	189	anti-parallel
Strand 3	C	249	251	anti-parallel
Strand 4	C	238	240	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	198	first strand
Strand 2	C	182	189	anti-parallel
Strand 3	C	166	173	anti-parallel
Strand 4	D	212	213	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	213	first strand
Strand 2	D	166	173	parallel
Strand 3	D	182	189	anti-parallel
Strand 4	D	195	198	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	213	first strand
Strand 2	D	166	173	parallel
Strand 3	D	182	189	anti-parallel
Strand 4	D	249	251	anti-parallel
Strand 5	D	238	240	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	379	first strand
Strand 2	C	386	387	first strand
Strand 3	C	224	230	first strand
Strand 4	C	269	272	anti-parallel
Strand 5	C	296	299	anti-parallel
Strand 6	C	326	335	parallel
Strand 7	C	310	323	anti-parallel
Strand 8	C	386	387	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	254	first strand
Strand 2	C	257	258	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	379	first strand
Strand 2	D	386	387	first strand
Strand 3	D	224	230	first strand
Strand 4	D	269	272	anti-parallel
Strand 5	D	296	299	anti-parallel
Strand 6	D	326	335	parallel
Strand 7	D	310	323	anti-parallel
Strand 8	D	386	387	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	254	first strand
Strand 2	D	257	258	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	288	289	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CUY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CUY