Analysis of interatomic Contacts of Structural Units in PDB entry:
5CVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CVC entry

There are 3 chains in PDB entry 5CVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 16HIS 344
B
 TYR 16LEU 339
C
 TYR 16LEU 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 5CVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 31Right-handed alpha
Helix 2
AA2
A
42 50Right-handed alpha
Helix 3
AA3
A
59 66Right-handed 310
Helix 4
AA4
A
67 78Right-handed alpha
Helix 5
AA5
A
79 85Right-handed alpha
Helix 6
AA6
A
93 107Right-handed alpha
Helix 7
AA7
A
119 129Right-handed alpha
Helix 8
AA8
A
139 155Right-handed alpha
Helix 9
AA9
A
164 182Right-handed alpha
Helix 10
AB1
A
195 209Right-handed alpha
Helix 11
AB2
A
223 232Right-handed alpha
Helix 12
AB3
A
255 263Right-handed alpha
Helix 13
AB4
A
270 284Right-handed alpha
Helix 14
AB5
A
290 302Right-handed alpha
Helix 15
AB6
A
302 307Right-handed alpha
Helix 16
AB7
A
308 314Right-handed alpha
Helix 17
AB8
A
328 344Right-handed alpha
Helix 18
AB9
B
19 31Right-handed alpha
Helix 19
AC1
B
42 50Right-handed alpha
Helix 20
AC2
B
59 66Right-handed 310
Helix 21
AC3
B
67 77Right-handed alpha
Helix 22
AC4
B
79 84Right-handed alpha
Helix 23
AC5
B
93 107Right-handed alpha
Helix 24
AC6
B
121 129Right-handed alpha
Helix 25
AC7
B
139 155Right-handed alpha
Helix 26
AC8
B
164 172Right-handed alpha
Helix 27
AC9
B
172 182Right-handed alpha
Helix 28
AD1
B
195 209Right-handed alpha
Helix 29
AD2
B
223 232Right-handed alpha
Helix 30
AD3
B
255 263Right-handed alpha
Helix 31
AD4
B
270 284Right-handed alpha
Helix 32
AD5
B
290 302Right-handed alpha
Helix 33
AD6
B
328 338Right-handed alpha
Helix 34
AD7
C
19 31Right-handed alpha
Helix 35
AD8
C
42 50Right-handed alpha
Helix 36
AD9
C
59 66Right-handed 310
Helix 37
AE1
C
67 77Right-handed alpha
Helix 38
AE2
C
79 84Right-handed alpha
Helix 39
AE3
C
93 107Right-handed alpha
Helix 40
AE4
C
122 129Right-handed alpha
Helix 41
AE5
C
142 155Right-handed alpha
Helix 42
AE6
C
164 172Right-handed alpha
Helix 43
AE7
C
172 182Right-handed alpha
Helix 44
AE8
C
195 209Right-handed alpha
Helix 45
AE9
C
223 232Right-handed alpha
Helix 46
AF1
C
255 263Right-handed alpha
Helix 47
AF2
C
270 284Right-handed alpha
Helix 48
AF3
C
290 302Right-handed alpha
Helix 49
AF4
C
302 307Right-handed alpha
Helix 50
AF5
C
308 314Right-handed alpha
Helix 51
AF6
C
328 339Right-handed alpha
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There are 6 sheets in PDB entry 5CVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
52 57anti-parallel
Strand 3
A
316 321parallel
Strand 4
A
187 191parallel
Strand 5
A
213 219parallel
Strand 6
A
265 269parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
110 115parallel
Strand 3
A
87 90parallel
Strand 4
A
157 158parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
52 57anti-parallel
Strand 3
B
316 321parallel
Strand 4
B
187 191parallel
Strand 5
B
213 219parallel
Strand 6
B
265 269parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 136first strand
Strand 2
B
110 115parallel
Strand 3
B
87 90parallel
Strand 4
B
157 158parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 40first strand
Strand 2
C
52 57anti-parallel
Strand 3
C
316 321parallel
Strand 4
C
187 191parallel
Strand 5
C
213 219parallel
Strand 6
C
265 269parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 135first strand
Strand 2
C
110 114parallel
Strand 3
C
87 90parallel
Strand 4
C
157 158parallel
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