Analysis of interatomic Contacts of Structural Units in PDB entry:
5CVJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CVJ entry

There are 4 chains in PDB entry 5CVJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLU 8	ALA 368
A	ALA 7	THR 367
B	HIS 15	ALA 368
C	PRO 13	ALA 368

There are 76 helices in PDB entry 5CVJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	14	30	Right-handed alpha
Helix 2	AA2	D	32	44	Right-handed alpha
Helix 3	AA3	D	45	54	Right-handed alpha
Helix 4	AA4	D	61	67	Right-handed alpha
Helix 5	AA5	D	75	90	Right-handed alpha
Helix 6	AA6	D	113	118	Right-handed 310
Helix 7	AA7	D	127	135	Right-handed alpha
Helix 8	AA8	D	136	141	Right-handed alpha
Helix 9	AA9	D	142	144	Right-handed 310
Helix 10	AB1	D	145	153	Right-handed alpha
Helix 11	AB2	D	155	162	Right-handed alpha
Helix 12	AB3	D	164	170	Right-handed alpha
Helix 13	AB4	D	172	198	Right-handed alpha
Helix 14	AB5	D	215	225	Right-handed alpha
Helix 15	AB6	D	235	240	Right-handed alpha
Helix 16	AB7	D	270	274	Right-handed 310
Helix 17	AB8	D	275	289	Right-handed alpha
Helix 18	AB9	D	310	327	Right-handed alpha
Helix 19	AC1	D	334	345	Right-handed alpha
Helix 20	AC2	A	14	30	Right-handed alpha
Helix 21	AC3	A	32	44	Right-handed alpha
Helix 22	AC4	A	45	54	Right-handed alpha
Helix 23	AC5	A	61	67	Right-handed alpha
Helix 24	AC6	A	75	90	Right-handed alpha
Helix 25	AC7	A	113	118	Right-handed 310
Helix 26	AC8	A	127	135	Right-handed alpha
Helix 27	AC9	A	136	141	Right-handed alpha
Helix 28	AD1	A	142	144	Right-handed 310
Helix 29	AD2	A	145	153	Right-handed alpha
Helix 30	AD3	A	155	162	Right-handed alpha
Helix 31	AD4	A	164	172	Right-handed alpha
Helix 32	AD5	A	172	198	Right-handed alpha
Helix 33	AD6	A	215	225	Right-handed alpha
Helix 34	AD7	A	235	240	Right-handed alpha
Helix 35	AD8	A	270	274	Right-handed 310
Helix 36	AD9	A	275	290	Right-handed alpha
Helix 37	AE1	A	310	327	Right-handed alpha
Helix 38	AE2	A	334	345	Right-handed alpha
Helix 39	AE3	B	16	30	Right-handed alpha
Helix 40	AE4	B	32	44	Right-handed alpha
Helix 41	AE5	B	45	54	Right-handed alpha
Helix 42	AE6	B	61	67	Right-handed alpha
Helix 43	AE7	B	75	90	Right-handed alpha
Helix 44	AE8	B	113	118	Right-handed 310
Helix 45	AE9	B	127	135	Right-handed alpha
Helix 46	AF1	B	136	141	Right-handed alpha
Helix 47	AF2	B	142	144	Right-handed 310
Helix 48	AF3	B	145	153	Right-handed alpha
Helix 49	AF4	B	155	162	Right-handed alpha
Helix 50	AF5	B	164	170	Right-handed alpha
Helix 51	AF6	B	172	198	Right-handed alpha
Helix 52	AF7	B	215	225	Right-handed alpha
Helix 53	AF8	B	235	240	Right-handed alpha
Helix 54	AF9	B	270	274	Right-handed 310
Helix 55	AG1	B	275	289	Right-handed alpha
Helix 56	AG2	B	310	327	Right-handed alpha
Helix 57	AG3	B	334	345	Right-handed alpha
Helix 58	AG4	C	14	30	Right-handed alpha
Helix 59	AG5	C	32	44	Right-handed alpha
Helix 60	AG6	C	45	54	Right-handed alpha
Helix 61	AG7	C	61	67	Right-handed alpha
Helix 62	AG8	C	75	90	Right-handed alpha
Helix 63	AG9	C	113	118	Right-handed 310
Helix 64	AH1	C	127	135	Right-handed alpha
Helix 65	AH2	C	136	141	Right-handed alpha
Helix 66	AH3	C	142	144	Right-handed 310
Helix 67	AH4	C	145	153	Right-handed alpha
Helix 68	AH5	C	155	162	Right-handed alpha
Helix 69	AH6	C	164	170	Right-handed alpha
Helix 70	AH7	C	172	198	Right-handed alpha
Helix 71	AH8	C	215	225	Right-handed alpha
Helix 72	AH9	C	235	240	Right-handed alpha
Helix 73	AI1	C	270	274	Right-handed 310
Helix 74	AI2	C	275	290	Right-handed alpha
Helix 75	AI3	C	310	327	Right-handed alpha
Helix 76	AI4	C	334	345	Right-handed alpha

There are 8 sheets in PDB entry 5CVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	99	first strand
Strand 2	D	105	111	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	248	252	first strand
Strand 2	D	229	234	parallel
Strand 3	D	206	210	parallel
Strand 4	D	264	268	parallel
Strand 5	D	295	300	parallel
Strand 6	D	359	365	anti-parallel
Strand 7	D	349	356	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	105	111	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	252	first strand
Strand 2	A	229	234	parallel
Strand 3	A	206	210	parallel
Strand 4	A	264	268	parallel
Strand 5	A	295	300	parallel
Strand 6	A	359	365	anti-parallel
Strand 7	A	349	356	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	99	first strand
Strand 2	B	105	111	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	252	first strand
Strand 2	B	229	234	parallel
Strand 3	B	206	210	parallel
Strand 4	B	264	268	parallel
Strand 5	B	295	300	parallel
Strand 6	B	359	365	anti-parallel
Strand 7	B	349	356	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	99	first strand
Strand 2	C	105	111	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	252	first strand
Strand 2	C	229	234	parallel
Strand 3	C	206	210	parallel
Strand 4	C	264	268	parallel
Strand 5	C	295	300	parallel
Strand 6	C	359	365	anti-parallel
Strand 7	C	349	356	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CVJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CVJ