Analysis of interatomic Contacts of Structural Units in PDB entry:
5CVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CVL entry

There is 1 chain in PDB entry 5CVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 12ASN 563
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5CVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 151Right-handed alpha
Helix 2
AA2
A
328 335Right-handed alpha
Helix 3
AA3
A
402 410Right-handed alpha
Helix 4
AA4
A
462 471Right-handed alpha
Helix 5
AA5
A
474 478Right-handed 310
Helix 6
AA6
A
531 534Right-handed 310
Helix 7
AA7
A
535 546Right-handed alpha
Helix 8
AA8
A
547 555Right-handed alpha
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There are 10 sheets in PDB entry 5CVL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
429 433anti-parallel
Strand 3
A
15 21anti-parallel
Strand 4
A
514 519anti-parallel
Strand 5
A
524 529anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
54 58anti-parallel
Strand 4
A
67 71anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 84first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
99 103anti-parallel
Strand 4
A
108 113anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 126first strand
Strand 2
A
131 136anti-parallel
Strand 3
A
141 145anti-parallel
Strand 4
A
162 164anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
183 187anti-parallel
Strand 3
A
192 195anti-parallel
Strand 4
A
202 206anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 218first strand
Strand 2
A
224 229anti-parallel
Strand 3
A
233 238anti-parallel
Strand 4
A
243 249anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
287 292anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 302first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
321 325anti-parallel
Strand 4
A
355 357anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 368first strand
Strand 2
A
374 379anti-parallel
Strand 3
A
384 388anti-parallel
Strand 4
A
393 399anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
459 461anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il