Analysis of interatomic Contacts of Structural Units in PDB entry:
5CVN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CVN entry

There are 3 chains in PDB entry 5CVN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 13PHE 562
B
 ASN 31GLU 366
D
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5CVN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
127 129Right-handed 310
Helix 2
AA2
A
146 151Right-handed alpha
Helix 3
AA3
A
402 410Right-handed alpha
Helix 4
AA4
A
462 471Right-handed alpha
Helix 5
AA5
A
474 478Right-handed 310
Helix 6
AA6
A
531 534Right-handed 310
Helix 7
AA7
A
535 546Right-handed alpha
Helix 8
AA8
A
547 555Right-handed alpha
Helix 9
AA9
B
43 55Right-handed alpha
Helix 10
AB1
B
56 70Right-handed alpha
Helix 11
AB2
B
75 89Right-handed alpha
Helix 12
AB3
B
99 110Right-handed alpha
Helix 13
AB4
B
120 146Right-handed alpha
Helix 14
AB5
B
166 173Right-handed alpha
Helix 15
AB6
B
208 216Right-handed alpha
Helix 16
AB7
B
222 226Right-handed 310
Helix 17
AB8
B
336 342Right-handed alpha
Helix 18
AB9
D
22 35Right-handed alpha
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There are 18 sheets in PDB entry 5CVN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 423first strand
Strand 2
A
429 433anti-parallel
Strand 3
A
15 21anti-parallel
Strand 4
A
514 519anti-parallel
Strand 5
A
524 529anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
44 49anti-parallel
Strand 3
A
54 58anti-parallel
Strand 4
A
67 71anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 83first strand
Strand 2
A
90 94anti-parallel
Strand 3
A
99 103anti-parallel
Strand 4
A
108 113anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
131 135anti-parallel
Strand 3
A
141 145anti-parallel
Strand 4
A
162 164anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 176first strand
Strand 2
A
183 187anti-parallel
Strand 3
A
192 195anti-parallel
Strand 4
A
202 206anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 218first strand
Strand 2
A
224 229anti-parallel
Strand 3
A
233 238anti-parallel
Strand 4
A
243 249anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
287 292anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 302first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
321 325anti-parallel
Strand 4
A
355 357anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 368first strand
Strand 2
A
374 379anti-parallel
Strand 3
A
384 388anti-parallel
Strand 4
A
393 399anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 444first strand
Strand 2
A
459 461anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
94 97parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 195first strand
Strand 2
B
174 182anti-parallel
Strand 3
B
238 246anti-parallel
Strand 4
B
219 221anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
250 256parallel
Strand 3
B
355 364anti-parallel
Strand 4
B
293 305anti-parallel
Strand 5
B
279 283anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 201first strand
Strand 2
B
250 256parallel
Strand 3
B
355 364anti-parallel
Strand 4
B
293 305anti-parallel
Strand 5
B
313 320anti-parallel
Strand 6
B
323 328anti-parallel
Strand 7
B
331 335anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
274 275parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 229first strand
Strand 2
B
234 236anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 261first strand
Strand 2
B
266 269anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 70parallel
Strand 4
D
42 45anti-parallel
Strand 5
D
48 49anti-parallel
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