Analysis of interatomic Contacts of Structural Units in PDB entry:
5CVO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CVO entry

There are 4 chains in PDB entry 5CVO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 13	UNK 671
B	ASN 31	GLU 366
C	MET 1	GLY 76
D	ARG 13	PRO 296

There are 45 helices in PDB entry 5CVO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	146	151	Right-handed alpha
Helix 2	AA2	A	328	335	Right-handed alpha
Helix 3	AA3	A	402	410	Right-handed alpha
Helix 4	AA4	A	462	471	Right-handed alpha
Helix 5	AA5	A	474	478	Right-handed 310
Helix 6	AA6	A	531	534	Right-handed 310
Helix 7	AA7	A	535	546	Right-handed alpha
Helix 8	AA8	A	547	555	Right-handed alpha
Helix 9	AA9	A	597	609	Right-handed alpha
Helix 10	AB1	A	621	632	Right-handed alpha
Helix 11	AB2	A	647	653	Right-handed alpha
Helix 12	AB3	B	43	55	Right-handed alpha
Helix 13	AB4	B	56	70	Right-handed alpha
Helix 14	AB5	B	75	89	Right-handed alpha
Helix 15	AB6	B	99	110	Right-handed alpha
Helix 16	AB7	B	111	114	Right-handed 310
Helix 17	AB8	B	121	144	Right-handed alpha
Helix 18	AB9	B	166	173	Right-handed alpha
Helix 19	AC1	B	208	216	Right-handed alpha
Helix 20	AC2	B	222	226	Right-handed 310
Helix 21	AC3	B	338	343	Right-handed alpha
Helix 22	AC4	C	22	35	Right-handed alpha
Helix 23	AC5	C	37	41	Right-handed 310
Helix 24	AC6	D	146	151	Right-handed alpha
Helix 25	AC7	D	328	335	Right-handed alpha
Helix 26	AC8	D	402	410	Right-handed alpha
Helix 27	AC9	D	462	471	Right-handed alpha
Helix 28	AD1	D	474	478	Right-handed 310
Helix 29	AD2	D	531	534	Right-handed 310
Helix 30	AD3	D	535	546	Right-handed alpha
Helix 31	AD4	D	547	555	Right-handed alpha
Helix 32	AD5	D	597	609	Right-handed alpha
Helix 33	AD6	D	621	632	Right-handed alpha
Helix 34	AD7	D	649	655	Right-handed alpha
Helix 35	AD8	E	43	55	Right-handed alpha
Helix 36	AD9	E	56	70	Right-handed alpha
Helix 37	AE1	E	75	89	Right-handed alpha
Helix 38	AE2	E	99	110	Right-handed alpha
Helix 39	AE3	E	111	114	Right-handed 310
Helix 40	AE4	E	121	144	Right-handed alpha
Helix 41	AE5	E	166	173	Right-handed alpha
Helix 42	AE6	E	208	216	Right-handed alpha
Helix 43	AE7	E	336	344	Right-handed alpha
Helix 44	AE8	F	22	35	Right-handed alpha
Helix 45	AE9	F	37	41	Right-handed 310

There are 39 sheets in PDB entry 5CVO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	421	423	first strand
Strand 2	A	429	433	anti-parallel
Strand 3	A	15	21	anti-parallel
Strand 4	A	514	519	anti-parallel
Strand 5	A	524	529	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	39	first strand
Strand 2	A	44	49	anti-parallel
Strand 3	A	54	58	anti-parallel
Strand 4	A	67	71	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	A	90	94	anti-parallel
Strand 3	A	99	103	anti-parallel
Strand 4	A	108	113	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	131	135	anti-parallel
Strand 3	A	141	145	anti-parallel
Strand 4	A	162	164	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	176	first strand
Strand 2	A	183	187	anti-parallel
Strand 3	A	192	196	anti-parallel
Strand 4	A	201	206	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	218	first strand
Strand 2	A	224	229	anti-parallel
Strand 3	A	233	238	anti-parallel
Strand 4	A	243	249	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	260	first strand
Strand 2	A	266	271	anti-parallel
Strand 3	A	275	280	anti-parallel
Strand 4	A	287	292	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	302	first strand
Strand 2	A	311	316	anti-parallel
Strand 3	A	321	325	anti-parallel
Strand 4	A	355	357	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	368	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	384	388	anti-parallel
Strand 4	A	393	399	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	444	first strand
Strand 2	A	459	461	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	37	first strand
Strand 2	B	94	97	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	C	74	75	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	195	first strand
Strand 2	B	174	182	anti-parallel
Strand 3	B	238	246	anti-parallel
Strand 4	B	219	221	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	250	255	parallel
Strand 3	B	355	364	anti-parallel
Strand 4	B	295	305	anti-parallel
Strand 5	B	279	281	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	200	first strand
Strand 2	B	250	255	parallel
Strand 3	B	355	364	anti-parallel
Strand 4	B	295	305	anti-parallel
Strand 5	B	313	320	anti-parallel
Strand 6	B	323	328	anti-parallel
Strand 7	B	331	335	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	274	275	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	229	first strand
Strand 2	B	234	236	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	261	first strand
Strand 2	B	266	269	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	6	anti-parallel
Strand 3	C	66	70	parallel
Strand 4	C	42	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	421	423	first strand
Strand 2	D	429	433	anti-parallel
Strand 3	D	15	21	anti-parallel
Strand 4	D	514	519	anti-parallel
Strand 5	D	524	529	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	39	first strand
Strand 2	D	44	49	anti-parallel
Strand 3	D	54	58	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	83	first strand
Strand 2	D	90	94	anti-parallel
Strand 3	D	99	103	anti-parallel
Strand 4	D	108	113	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	126	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	141	145	anti-parallel
Strand 4	D	162	164	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	171	176	first strand
Strand 2	D	183	187	anti-parallel
Strand 3	D	192	195	anti-parallel
Strand 4	D	202	206	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	218	first strand
Strand 2	D	224	229	anti-parallel
Strand 3	D	233	238	anti-parallel
Strand 4	D	243	249	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	260	first strand
Strand 2	D	266	271	anti-parallel
Strand 3	D	275	280	anti-parallel
Strand 4	D	287	292	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	302	first strand
Strand 2	D	311	316	anti-parallel
Strand 3	D	321	325	anti-parallel
Strand 4	D	355	357	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	363	368	first strand
Strand 2	D	374	379	anti-parallel
Strand 3	D	384	388	anti-parallel
Strand 4	D	393	399	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	442	444	first strand
Strand 2	D	459	461	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	569	570	first strand
Strand 2	D	666	667	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	37	first strand
Strand 2	E	94	97	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	F	74	75	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	195	first strand
Strand 2	E	174	182	anti-parallel
Strand 3	E	238	246	anti-parallel
Strand 4	E	219	221	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	250	255	parallel
Strand 3	E	355	364	anti-parallel
Strand 4	E	295	305	anti-parallel
Strand 5	E	279	281	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	198	200	first strand
Strand 2	E	250	255	parallel
Strand 3	E	355	364	anti-parallel
Strand 4	E	295	305	anti-parallel
Strand 5	E	313	320	anti-parallel
Strand 6	E	323	328	anti-parallel
Strand 7	E	331	335	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	207	first strand
Strand 2	E	274	275	parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	227	229	first strand
Strand 2	E	234	236	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	261	first strand
Strand 2	E	266	269	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	16	first strand
Strand 2	F	2	6	anti-parallel
Strand 3	F	66	70	parallel
Strand 4	F	42	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CVO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CVO