Analysis of interatomic Contacts of Structural Units in PDB entry:
5CVV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CVV entry

There are 2 chains in PDB entry 5CVV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 16ALA 368
B
 SER 16ALA 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5CVV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 31Right-handed alpha
Helix 2
AA2
A
32 44Right-handed alpha
Helix 3
AA3
A
45 54Right-handed alpha
Helix 4
AA4
A
61 67Right-handed alpha
Helix 5
AA5
A
75 90Right-handed alpha
Helix 6
AA6
A
113 118Right-handed 310
Helix 7
AA7
A
127 135Right-handed alpha
Helix 8
AA8
A
136 141Right-handed alpha
Helix 9
AA9
A
142 144Right-handed 310
Helix 10
AB1
A
145 153Right-handed alpha
Helix 11
AB2
A
155 162Right-handed alpha
Helix 12
AB3
A
164 170Right-handed alpha
Helix 13
AB4
A
172 198Right-handed alpha
Helix 14
AB5
A
215 225Right-handed alpha
Helix 15
AB6
A
235 240Right-handed alpha
Helix 16
AB7
A
270 274Right-handed 310
Helix 17
AB8
A
275 290Right-handed alpha
Helix 18
AB9
A
310 327Right-handed alpha
Helix 19
AC1
A
334 345Right-handed alpha
Helix 20
AC2
B
17 31Right-handed alpha
Helix 21
AC3
B
32 44Right-handed alpha
Helix 22
AC4
B
45 54Right-handed alpha
Helix 23
AC5
B
61 67Right-handed alpha
Helix 24
AC6
B
75 90Right-handed alpha
Helix 25
AC7
B
113 118Right-handed 310
Helix 26
AC8
B
127 135Right-handed alpha
Helix 27
AC9
B
136 141Right-handed alpha
Helix 28
AD1
B
142 144Right-handed 310
Helix 29
AD2
B
145 153Right-handed alpha
Helix 30
AD3
B
155 162Right-handed alpha
Helix 31
AD4
B
164 172Right-handed alpha
Helix 32
AD5
B
172 198Right-handed alpha
Helix 33
AD6
B
215 225Right-handed alpha
Helix 34
AD7
B
235 240Right-handed alpha
Helix 35
AD8
B
270 274Right-handed 310
Helix 36
AD9
B
275 290Right-handed alpha
Helix 37
AE1
B
310 327Right-handed alpha
Helix 38
AE2
B
334 345Right-handed alpha
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There are 4 sheets in PDB entry 5CVV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 98first strand
Strand 2
A
106 111anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
229 234parallel
Strand 3
A
206 210parallel
Strand 4
A
264 268parallel
Strand 5
A
295 300parallel
Strand 6
A
359 365anti-parallel
Strand 7
A
349 356anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 97first strand
Strand 2
B
107 111anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 252first strand
Strand 2
B
229 234parallel
Strand 3
B
206 210parallel
Strand 4
B
264 268parallel
Strand 5
B
295 300parallel
Strand 6
B
359 365anti-parallel
Strand 7
B
349 356anti-parallel
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