Analysis of interatomic Contacts of Structural Units in PDB entry:
5CW3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CW3 entry

There are 4 chains in PDB entry 5CW3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3MET 250
B
 ASP 3ARG 272
C
 LEU 6MET 250
D
 ASP 5LYS 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 5CW3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
65 84Right-handed alpha
Helix 3
AA3
A
104 119Right-handed alpha
Helix 4
AA4
A
166 190Right-handed alpha
Helix 5
AA5
A
196 218Right-handed alpha
Helix 6
AA6
A
218 250Right-handed alpha
Helix 7
AA7
B
12 25Right-handed alpha
Helix 8
AA8
B
68 72Right-handed 310
Helix 9
AA9
B
81 90Right-handed alpha
Helix 10
AB1
B
112 129Right-handed alpha
Helix 11
AB2
B
133 137Right-handed 310
Helix 12
AB3
B
204 212Right-handed alpha
Helix 13
AB4
B
222 272Right-handed alpha
Helix 14
AB5
C
13 24Right-handed alpha
Helix 15
AB6
C
66 83Right-handed alpha
Helix 16
AB7
C
104 118Right-handed alpha
Helix 17
AB8
C
166 190Right-handed alpha
Helix 18
AB9
C
196 218Right-handed alpha
Helix 19
AC1
C
218 250Right-handed alpha
Helix 20
AC2
D
12 25Right-handed alpha
Helix 21
AC3
D
68 72Right-handed 310
Helix 22
AC4
D
81 90Right-handed alpha
Helix 23
AC5
D
91 94Right-handed 310
Helix 24
AC6
D
112 126Right-handed alpha
Helix 25
AC7
D
133 137Right-handed 310
Helix 26
AC8
D
148 150Right-handed 310
Helix 27
AC9
D
205 212Right-handed alpha
Helix 28
AD1
D
222 269Right-handed alpha
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There are 4 sheets in PDB entry 5CW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
138 147anti-parallel
Strand 3
B
152 162anti-parallel
Strand 4
A
122 128first strand
Strand 5
A
88 97parallel
Strand 6
A
32 39anti-parallel
Strand 7
A
43 51anti-parallel
Strand 8
A
8 12parallel
Strand 9
A
157 160parallel
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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 154first strand
Strand 2
A
138 147anti-parallel
Strand 3
B
168 176first strand
Strand 4
B
5 11parallel
Strand 5
B
54 66parallel
Strand 6
B
29 42anti-parallel
Strand 7
B
96 104anti-parallel
Strand 8
B
138 146parallel
Strand 9
B
152 162anti-parallel
Strand 10
A
122 128first strand
Strand 11
A
88 97parallel
Strand 12
A
32 39anti-parallel
Strand 13
A
43 51anti-parallel
Strand 14
A
8 12parallel
Strand 15
A
157 160parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 154first strand
Strand 2
C
138 147anti-parallel
Strand 3
D
152 162anti-parallel
Strand 4
C
122 128first strand
Strand 5
C
88 97parallel
Strand 6
C
32 39anti-parallel
Strand 7
C
43 51anti-parallel
Strand 8
C
8 12parallel
Strand 9
C
157 160parallel
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There are 15 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 154first strand
Strand 2
C
138 147anti-parallel
Strand 3
D
168 176first strand
Strand 4
D
6 11parallel
Strand 5
D
56 66parallel
Strand 6
D
29 40anti-parallel
Strand 7
D
96 103anti-parallel
Strand 8
D
138 146parallel
Strand 9
D
152 162anti-parallel
Strand 10
C
122 128first strand
Strand 11
C
88 97parallel
Strand 12
C
32 39anti-parallel
Strand 13
C
43 51anti-parallel
Strand 14
C
8 12parallel
Strand 15
C
157 160parallel
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