Analysis of interatomic Contacts of Structural Units in PDB entry:
5CW5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CW5 entry

There are 4 chains in PDB entry 5CW5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4LYS 249
B
 ASP 5ILE 264
C
 SER 4LEU 247
D
 ASP 5ILE 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5CW5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
67 84Right-handed alpha
Helix 3
AA3
A
166 190Right-handed alpha
Helix 4
AA4
A
196 218Right-handed alpha
Helix 5
AA5
A
218 248Right-handed alpha
Helix 6
AA6
B
12 25Right-handed alpha
Helix 7
AA7
B
68 72Right-handed 310
Helix 8
AA8
B
81 90Right-handed alpha
Helix 9
AA9
B
91 94Right-handed 310
Helix 10
AB1
B
112 128Right-handed alpha
Helix 11
AB2
B
133 137Right-handed 310
Helix 12
AB3
B
204 211Right-handed alpha
Helix 13
AB4
B
222 264Right-handed alpha
Helix 14
AB5
C
13 24Right-handed alpha
Helix 15
AB6
C
66 84Right-handed alpha
Helix 16
AB7
C
166 190Right-handed alpha
Helix 17
AB8
C
196 218Right-handed alpha
Helix 18
AB9
C
218 247Right-handed alpha
Helix 19
AC1
D
12 25Right-handed alpha
Helix 20
AC2
D
68 73Right-handed 310
Helix 21
AC3
D
81 90Right-handed alpha
Helix 22
AC4
D
91 94Right-handed 310
Helix 23
AC5
D
112 128Right-handed alpha
Helix 24
AC6
D
133 137Right-handed 310
Helix 25
AC7
D
203 212Right-handed alpha
Helix 26
AC8
D
222 264Right-handed alpha
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There are 5 sheets in PDB entry 5CW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
138 148anti-parallel
Strand 3
B
152 162anti-parallel
Strand 4
A
121 131first strand
Strand 5
A
88 97parallel
Strand 6
A
32 39anti-parallel
Strand 7
A
43 51anti-parallel
Strand 8
A
8 12parallel
Strand 9
A
157 160parallel
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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 154first strand
Strand 2
A
138 148anti-parallel
Strand 3
B
168 176first strand
Strand 4
B
6 11parallel
Strand 5
B
56 66parallel
Strand 6
B
29 40anti-parallel
Strand 7
B
96 104anti-parallel
Strand 8
B
138 146parallel
Strand 9
B
152 162anti-parallel
Strand 10
A
121 131first strand
Strand 11
A
88 97parallel
Strand 12
A
32 39anti-parallel
Strand 13
A
43 51anti-parallel
Strand 14
A
8 12parallel
Strand 15
A
157 160parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 160first strand
Strand 2
C
8 12parallel
Strand 3
C
43 51parallel
Strand 4
C
32 39anti-parallel
Strand 5
C
88 97anti-parallel
Strand 6
C
121 131parallel
Strand 7
C
138 147anti-parallel
Strand 8
C
152 154anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 160first strand
Strand 2
C
8 12parallel
Strand 3
C
43 51parallel
Strand 4
C
32 39anti-parallel
Strand 5
C
88 97anti-parallel
Strand 6
C
121 131parallel
Strand 7
C
138 147anti-parallel
Strand 8
D
152 162anti-parallel
Strand 9
D
138 146anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
196 197first strand
Strand 2
D
29 40anti-parallel
Strand 3
D
96 104anti-parallel
Strand 4
D
138 146parallel
Strand 5
D
152 162anti-parallel
Strand 6
D
168 176anti-parallel
Strand 7
D
6 11parallel
Strand 8
D
56 66parallel
Strand 9
D
29 40anti-parallel
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