Analysis of interatomic Contacts of Structural Units in PDB entry:
5CWE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CWE entry

There are 2 chains in PDB entry 5CWE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 393
B
 MET 1TRP 393
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5CWE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 10Right-handed 310
Helix 2
AA2
A
11 17Right-handed alpha
Helix 3
AA3
A
18 29Right-handed alpha
Helix 4
AA4
A
49 59Right-handed alpha
Helix 5
AA5
A
66 70Right-handed 310
Helix 6
AA6
A
73 80Right-handed alpha
Helix 7
AA7
A
82 86Right-handed 310
Helix 8
AA8
A
89 99Right-handed alpha
Helix 9
AA9
A
100 102Right-handed 310
Helix 10
AB1
A
103 110Right-handed alpha
Helix 11
AB2
A
110 126Right-handed alpha
Helix 12
AB3
A
133 137Right-handed alpha
Helix 13
AB4
A
139 151Right-handed alpha
Helix 14
AB5
A
156 169Right-handed alpha
Helix 15
AB6
A
172 196Right-handed alpha
Helix 16
AB7
A
202 213Right-handed alpha
Helix 17
AB8
A
219 252Right-handed alpha
Helix 18
AB9
A
252 261Right-handed alpha
Helix 19
AC1
A
262 264Right-handed 310
Helix 20
AC2
A
265 277Right-handed alpha
Helix 21
AC3
A
308 314Right-handed alpha
Helix 22
AC4
A
339 343Right-handed 310
Helix 23
AC5
A
346 365Right-handed alpha
Helix 24
AC6
B
8 11Right-handed 310
Helix 25
AC7
B
12 17Right-handed alpha
Helix 26
AC8
B
18 29Right-handed alpha
Helix 27
AC9
B
49 57Right-handed alpha
Helix 28
AD1
B
65 70Right-handed 310
Helix 29
AD2
B
73 79Right-handed alpha
Helix 30
AD3
B
82 86Right-handed 310
Helix 31
AD4
B
89 99Right-handed alpha
Helix 32
AD5
B
100 102Right-handed 310
Helix 33
AD6
B
103 109Right-handed alpha
Helix 34
AD7
B
110 126Right-handed alpha
Helix 35
AD8
B
133 137Right-handed alpha
Helix 36
AD9
B
139 151Right-handed alpha
Helix 37
AE1
B
156 169Right-handed alpha
Helix 38
AE2
B
172 197Right-handed alpha
Helix 39
AE3
B
202 213Right-handed alpha
Helix 40
AE4
B
219 251Right-handed alpha
Helix 41
AE5
B
252 262Right-handed alpha
Helix 42
AE6
B
265 277Right-handed alpha
Helix 43
AE7
B
308 313Right-handed alpha
Helix 44
AE8
B
339 343Right-handed 310
Helix 45
AE9
B
346 364Right-handed alpha
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There are 7 sheets in PDB entry 5CWE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
31 35parallel
Strand 3
A
43 47anti-parallel
Strand 4
A
305 307parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
287 288anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
390 392anti-parallel
Strand 3
A
369 370anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
298 299anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
31 35parallel
Strand 3
B
43 47anti-parallel
Strand 4
B
304 307parallel
Strand 5
B
286 288anti-parallel
Strand 6
B
62 63anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
390 392anti-parallel
Strand 3
B
369 370anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 293first strand
Strand 2
B
298 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il