Analysis of interatomic Contacts of Structural Units in PDB entry:
5CWS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CWS entry

There are 12 chains in PDB entry 5CWS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 27	ARG 234
B	GLU 27	PRO 249
C	MET 467	LYS 649
D	SER 245	MET 468
E	PRO 74	GLN 314
F	ALA 141	LEU 180
G	MET 27	ARG 234
H	GLU 27	PRO 249
I	MET 467	LYS 649
J	SER 245	MET 468
K	PRO 74	GLN 314
L	ALA 141	LEU 180

There are 39 helices in PDB entry 5CWS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	205	211	Right-handed alpha
Helix 2	AA2	B	88	91	Right-handed 310
Helix 3	AA3	B	113	117	Right-handed 310
Helix 4	AA4	C	468	557	Right-handed alpha
Helix 5	AA5	C	573	608	Right-handed alpha
Helix 6	AA6	C	614	646	Right-handed alpha
Helix 7	AA7	C	647	649	Right-handed 310
Helix 8	AA8	D	246	272	Right-handed alpha
Helix 9	AA9	D	272	334	Right-handed alpha
Helix 10	AB1	D	370	414	Right-handed alpha
Helix 11	AB2	D	428	468	Right-handed alpha
Helix 12	AB3	E	75	86	Right-handed alpha
Helix 13	AB4	E	118	128	Right-handed alpha
Helix 14	AB5	E	141	210	Right-handed alpha
Helix 15	AB6	E	219	235	Right-handed alpha
Helix 16	AB7	E	236	264	Right-handed alpha
Helix 17	AB8	E	268	276	Right-handed alpha
Helix 18	AB9	E	278	312	Right-handed alpha
Helix 19	AC1	F	142	154	Right-handed alpha
Helix 20	AC2	F	169	179	Right-handed alpha
Helix 21	AC3	G	205	211	Right-handed alpha
Helix 22	AC4	H	88	91	Right-handed 310
Helix 23	AC5	H	113	117	Right-handed 310
Helix 24	AC6	I	468	557	Right-handed alpha
Helix 25	AC7	I	573	608	Right-handed alpha
Helix 26	AC8	I	614	646	Right-handed alpha
Helix 27	AC9	J	246	334	Right-handed alpha
Helix 28	AD1	J	370	414	Right-handed alpha
Helix 29	AD2	J	428	468	Right-handed alpha
Helix 30	AD3	K	75	86	Right-handed alpha
Helix 31	AD4	K	118	128	Right-handed alpha
Helix 32	AD5	K	141	210	Right-handed alpha
Helix 33	AD6	K	219	235	Right-handed alpha
Helix 34	AD7	K	236	264	Right-handed alpha
Helix 35	AD8	K	268	275	Right-handed alpha
Helix 36	AD9	K	276	307	Right-handed alpha
Helix 37	AE1	K	307	312	Right-handed alpha
Helix 38	AE2	L	142	154	Right-handed alpha
Helix 39	AE3	L	170	179	Right-handed alpha

There are 23 sheets in PDB entry 5CWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	125	129	parallel
Strand 3	A	108	113	anti-parallel
Strand 4	A	57	61	anti-parallel
Strand 5	A	68	72	anti-parallel
Strand 6	A	76	77	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	36	first strand
Strand 2	A	125	129	parallel
Strand 3	A	108	113	anti-parallel
Strand 4	A	120	121	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	47	first strand
Strand 2	A	93	98	anti-parallel
Strand 3	A	85	90	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	141	first strand
Strand 2	A	153	162	anti-parallel
Strand 3	A	196	204	anti-parallel
Strand 4	A	182	186	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	173	first strand
Strand 2	A	214	221	anti-parallel
Strand 3	A	228	233	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	33	first strand
Strand 2	B	43	51	anti-parallel
Strand 3	B	104	110	anti-parallel
Strand 4	B	95	99	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	38	first strand
Strand 2	B	143	147	parallel
Strand 3	B	118	124	anti-parallel
Strand 4	B	59	65	anti-parallel
Strand 5	B	71	78	anti-parallel
Strand 6	B	83	86	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	171	181	anti-parallel
Strand 3	B	212	221	anti-parallel
Strand 4	B	199	201	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	171	181	anti-parallel
Strand 3	B	212	221	anti-parallel
Strand 4	B	205	206	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	190	first strand
Strand 2	B	231	236	anti-parallel
Strand 3	B	241	246	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	102	first strand
Strand 2	E	134	140	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	36	first strand
Strand 2	G	125	129	parallel
Strand 3	G	108	113	anti-parallel
Strand 4	G	57	61	anti-parallel
Strand 5	G	68	72	anti-parallel
Strand 6	G	76	77	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	36	first strand
Strand 2	G	125	129	parallel
Strand 3	G	108	113	anti-parallel
Strand 4	G	120	121	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	47	first strand
Strand 2	G	93	98	anti-parallel
Strand 3	G	85	90	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	141	first strand
Strand 2	G	153	162	anti-parallel
Strand 3	G	196	204	anti-parallel
Strand 4	G	182	186	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	168	173	first strand
Strand 2	G	214	220	anti-parallel
Strand 3	G	228	233	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	33	first strand
Strand 2	H	43	51	anti-parallel
Strand 3	H	104	110	anti-parallel
Strand 4	H	94	99	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	38	first strand
Strand 2	H	143	147	parallel
Strand 3	H	118	125	anti-parallel
Strand 4	H	59	65	anti-parallel
Strand 5	H	71	78	anti-parallel
Strand 6	H	83	86	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	38	first strand
Strand 2	H	143	147	parallel
Strand 3	H	118	125	anti-parallel
Strand 4	H	136	139	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	160	first strand
Strand 2	H	171	181	anti-parallel
Strand 3	H	212	221	anti-parallel
Strand 4	H	199	201	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	160	first strand
Strand 2	H	171	181	anti-parallel
Strand 3	H	212	221	anti-parallel
Strand 4	H	205	206	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	187	190	first strand
Strand 2	H	231	236	anti-parallel
Strand 3	H	241	246	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	97	102	first strand
Strand 2	K	134	139	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CWS

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CWS