Analysis of interatomic Contacts of Structural Units in PDB entry:
5CWW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CWW entry

There are 2 chains in PDB entry 5CWW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 854	PHE 993
B	LYS 3	THR 554

There are 21 helices in PDB entry 5CWW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	865	871	Right-handed alpha
Helix 2	AA2	A	875	879	Right-handed 310
Helix 3	AA3	A	905	909	Right-handed 310
Helix 4	AA4	A	926	930	Right-handed 310
Helix 5	AA5	A	958	970	Right-handed alpha
Helix 6	AA6	B	9	13	Right-handed 310
Helix 7	AA7	B	16	22	Right-handed 310
Helix 8	AA8	B	69	78	Right-handed alpha
Helix 9	AA9	B	144	149	Right-handed 310
Helix 10	AB1	B	184	187	Right-handed 310
Helix 11	AB2	B	209	214	Right-handed alpha
Helix 12	AB3	B	221	226	Right-handed alpha
Helix 13	AB4	B	247	252	Right-handed alpha
Helix 14	AB5	B	267	271	Right-handed 310
Helix 15	AB6	B	297	316	Right-handed alpha
Helix 16	AB7	B	320	339	Right-handed alpha
Helix 17	AB8	B	383	388	Right-handed alpha
Helix 18	AB9	B	480	484	Right-handed 310
Helix 19	AC1	B	517	527	Right-handed alpha
Helix 20	AC2	B	533	544	Right-handed alpha
Helix 21	AC3	C	1442	1462	Right-handed alpha

There are 11 sheets in PDB entry 5CWW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	860	863	first strand
Strand 2	A	884	887	anti-parallel
Strand 3	A	891	895	anti-parallel
Strand 4	A	941	945	anti-parallel
Strand 5	A	986	990	anti-parallel
Strand 6	A	975	979	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	914	917	first strand
Strand 2	A	920	923	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	55	60	anti-parallel
Strand 3	B	63	68	anti-parallel
Strand 4	B	106	110	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	122	first strand
Strand 2	B	128	132	anti-parallel
Strand 3	B	137	141	anti-parallel
Strand 4	B	160	162	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	180	first strand
Strand 2	B	189	194	anti-parallel
Strand 3	B	198	203	anti-parallel
Strand 4	B	217	220	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	258	first strand
Strand 2	B	272	276	anti-parallel
Strand 3	B	281	284	anti-parallel
Strand 4	B	369	370	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	292	first strand
Strand 2	B	354	358	anti-parallel
Strand 3	B	343	345	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	469	476	parallel
Strand 3	B	437	441	anti-parallel
Strand 4	B	427	432	anti-parallel
Strand 5	B	389	395	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	469	476	parallel
Strand 3	C	1465	1466	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	491	494	first strand
Strand 2	B	501	506	anti-parallel
Strand 3	B	509	514	anti-parallel
Strand 4	B	548	554	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	570	first strand
Strand 2	B	574	580	anti-parallel
Strand 3	B	585	591	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CWW

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CWW