Analysis of interatomic Contacts of Structural Units in PDB entry:
5CXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CXF entry

There are 3 chains in PDB entry 5CXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 87	VAL 696
B	THR 86	GLU 697
C	GLY 83	TYR 695

There are 38 helices in PDB entry 5CXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	172	183	Right-handed alpha
Helix 2	AA2	A	203	205	Right-handed 310
Helix 3	AA3	A	293	295	Right-handed 310
Helix 4	AA4	A	338	343	Right-handed alpha
Helix 5	AA5	A	386	390	Right-handed 310
Helix 6	AA6	A	392	408	Right-handed alpha
Helix 7	AA7	A	478	521	Right-handed alpha
Helix 8	AA8	A	523	532	Right-handed alpha
Helix 9	AA9	A	596	598	Right-handed 310
Helix 10	AB1	A	637	641	Right-handed 310
Helix 11	AB2	A	667	673	Right-handed alpha
Helix 12	AB3	A	678	691	Right-handed alpha
Helix 13	AB4	B	172	182	Right-handed alpha
Helix 14	AB5	B	203	205	Right-handed 310
Helix 15	AB6	B	283	287	Right-handed 310
Helix 16	AB7	B	293	295	Right-handed 310
Helix 17	AB8	B	338	343	Right-handed alpha
Helix 18	AB9	B	386	388	Right-handed 310
Helix 19	AC1	B	389	408	Right-handed alpha
Helix 20	AC2	B	478	521	Right-handed alpha
Helix 21	AC3	B	523	533	Right-handed alpha
Helix 22	AC4	B	554	558	Right-handed 310
Helix 23	AC5	B	596	598	Right-handed 310
Helix 24	AC6	B	667	673	Right-handed alpha
Helix 25	AC7	B	678	691	Right-handed alpha
Helix 26	AC8	C	172	183	Right-handed alpha
Helix 27	AC9	C	203	205	Right-handed 310
Helix 28	AD1	C	283	287	Right-handed 310
Helix 29	AD2	C	293	295	Right-handed 310
Helix 30	AD3	C	338	343	Right-handed alpha
Helix 31	AD4	C	386	388	Right-handed 310
Helix 32	AD5	C	389	408	Right-handed alpha
Helix 33	AD6	C	478	521	Right-handed alpha
Helix 34	AD7	C	523	532	Right-handed alpha
Helix 35	AD8	C	596	598	Right-handed 310
Helix 36	AD9	C	637	641	Right-handed 310
Helix 37	AE1	C	667	673	Right-handed alpha
Helix 38	AE2	C	678	691	Right-handed alpha

There are 30 sheets in PDB entry 5CXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	95	first strand
Strand 2	A	544	552	anti-parallel
Strand 3	A	537	541	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	95	first strand
Strand 2	A	544	552	anti-parallel
Strand 3	A	102	104	anti-parallel
Strand 4	C	642	643	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	376	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	347	359	anti-parallel
Strand 4	A	122	130	anti-parallel
Strand 5	A	428	433	anti-parallel
Strand 6	A	415	422	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	169	first strand
Strand 2	A	136	154	anti-parallel
Strand 3	A	242	259	anti-parallel
Strand 4	A	266	268	anti-parallel
Strand 5	A	273	274	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	224	227	anti-parallel
Strand 3	A	242	259	anti-parallel
Strand 4	A	136	154	anti-parallel
Strand 5	A	331	335	anti-parallel
Strand 6	A	316	326	anti-parallel
Strand 7	A	297	306	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	210	212	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	193	first strand
Strand 2	A	196	201	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	560	first strand
Strand 2	A	578	582	anti-parallel
Strand 3	A	589	594	anti-parallel
Strand 4	A	600	601	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	574	first strand
Strand 2	A	607	609	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	620	first strand
Strand 2	A	623	628	anti-parallel
Strand 3	A	631	636	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	643	first strand
Strand 2	B	102	104	parallel
Strand 3	B	545	552	anti-parallel
Strand 4	B	92	95	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	643	first strand
Strand 2	B	102	104	parallel
Strand 3	B	545	552	anti-parallel
Strand 4	B	537	540	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	B	346	359	anti-parallel
Strand 4	B	123	131	anti-parallel
Strand 5	B	428	436	anti-parallel
Strand 6	B	412	422	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	169	first strand
Strand 2	B	136	154	anti-parallel
Strand 3	B	243	259	anti-parallel
Strand 4	B	266	268	anti-parallel
Strand 5	B	273	274	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	214	215	first strand
Strand 2	B	224	227	anti-parallel
Strand 3	B	243	259	anti-parallel
Strand 4	B	136	154	anti-parallel
Strand 5	B	331	335	anti-parallel
Strand 6	B	316	326	anti-parallel
Strand 7	B	297	306	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	210	212	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	193	first strand
Strand 2	B	196	201	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	560	first strand
Strand 2	B	578	581	anti-parallel
Strand 3	B	590	594	anti-parallel
Strand 4	B	600	601	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	574	first strand
Strand 2	B	607	609	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	615	620	first strand
Strand 2	B	623	628	anti-parallel
Strand 3	B	631	636	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	643	first strand
Strand 2	C	102	104	parallel
Strand 3	C	544	552	anti-parallel
Strand 4	C	92	95	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	643	first strand
Strand 2	C	102	104	parallel
Strand 3	C	544	552	anti-parallel
Strand 4	C	537	541	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	376	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	347	359	anti-parallel
Strand 4	C	121	130	anti-parallel
Strand 5	C	428	436	anti-parallel
Strand 6	C	412	422	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	169	first strand
Strand 2	C	136	154	anti-parallel
Strand 3	C	242	259	anti-parallel
Strand 4	C	267	268	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	214	215	first strand
Strand 2	C	224	227	anti-parallel
Strand 3	C	242	259	anti-parallel
Strand 4	C	136	154	anti-parallel
Strand 5	C	331	335	anti-parallel
Strand 6	C	316	326	anti-parallel
Strand 7	C	297	306	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	210	212	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	193	first strand
Strand 2	C	196	201	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	560	first strand
Strand 2	C	578	582	anti-parallel
Strand 3	C	589	594	anti-parallel
Strand 4	C	600	601	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	572	574	first strand
Strand 2	C	607	609	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	615	620	first strand
Strand 2	C	623	628	anti-parallel
Strand 3	C	631	636	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CXF