Analysis of interatomic Contacts of Structural Units in PDB entry:
5CXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CXP entry

There is 1 chain in PDB entry 5CXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ALA 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5CXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 40Right-handed alpha
Helix 2
AA2
A
56 60Right-handed 310
Helix 3
AA3
A
62 64Right-handed 310
Helix 4
AA4
A
65 78Right-handed alpha
Helix 5
AA5
A
90 94Right-handed 310
Helix 6
AA6
A
101 105Right-handed 310
Helix 7
AA7
A
108 110Right-handed 310
Helix 8
AA8
A
111 129Right-handed alpha
Helix 9
AA9
A
154 173Right-handed alpha
Helix 10
AB1
A
184 187Right-handed 310
Helix 11
AB2
A
188 194Right-handed alpha
Helix 12
AB3
A
194 199Right-handed alpha
Helix 13
AB4
A
216 222Right-handed alpha
Helix 14
AB5
A
237 254Right-handed alpha
Helix 15
AB6
A
282 292Right-handed alpha
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There are 3 sheets in PDB entry 5CXP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 361first strand
Strand 2
A
346 353anti-parallel
Strand 3
A
381 388anti-parallel
Strand 4
A
321 328anti-parallel
Strand 5
A
311 318anti-parallel
Strand 6
A
299 303anti-parallel
Strand 7
A
6 16anti-parallel
Strand 8
A
334 341parallel
Strand 9
A
372 377anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
46 51parallel
Strand 3
A
81 86parallel
Strand 4
A
135 137parallel
Strand 5
A
174 180parallel
Strand 6
A
203 207parallel
Strand 7
A
225 230parallel
Strand 8
A
259 264parallel
Strand 9
A
19 23parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
279 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il