Analysis of interatomic Contacts of Structural Units in PDB entry:
5CXU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CXU entry

There is 1 chain in PDB entry 5CXU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASN 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 5CXU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed alpha
Helix 2
AA2
A
67 74Right-handed 310
Helix 3
AA3
A
76 87Right-handed alpha
Helix 4
AA4
A
115 124Right-handed alpha
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
132 141Right-handed alpha
Helix 7
AA7
A
146 148Right-handed 310
Helix 8
AA8
A
156 169Right-handed alpha
Helix 9
AA9
A
201 205Right-handed 310
Helix 10
AB1
A
227 239Right-handed alpha
Helix 11
AB2
A
254 269Right-handed alpha
Helix 12
AB3
A
270 272Right-handed 310
Back to top of page

There is 1 sheet (AA1) in PDB entry 5CXU.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 33first strand
Strand 2
A
38 45anti-parallel
Strand 3
A
95 99anti-parallel
Strand 4
A
58 62parallel
Strand 5
A
150 155parallel
Strand 6
A
175 179parallel
Strand 7
A
213 219parallel
Strand 8
A
244 248parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il