Analysis of interatomic Contacts of Structural Units in PDB entry:
5CXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CXW entry

There is 1 chain in PDB entry 5CXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 249PRO 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5CXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 268Right-handed alpha
Helix 2
AA2
A
270 278Right-handed alpha
Helix 3
AA3
A
286 302Right-handed alpha
Helix 4
AA4
A
344 346Right-handed 310
Helix 5
AA5
A
347 358Right-handed alpha
Helix 6
AA6
A
380 384Right-handed 310
Helix 7
AA7
A
391 398Right-handed alpha
Helix 8
AA8
A
399 410Right-handed alpha
Helix 9
AA9
A
412 425Right-handed alpha
Helix 10
AB1
A
447 453Right-handed 310
Helix 11
AB2
A
458 471Right-handed alpha
Helix 12
AB3
A
507 519Right-handed alpha
Helix 13
AB4
A
520 525Right-handed alpha
Helix 14
AB5
A
530 534Right-handed 310
Helix 15
AB6
A
590 605Right-handed alpha
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There are 6 sheets in PDB entry 5CXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 283first strand
Strand 2
A
481 485anti-parallel
Strand 3
A
491 494anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
308 315anti-parallel
Strand 3
A
563 571anti-parallel
Strand 4
A
551 560anti-parallel
Strand 5
A
537 544anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
456 457anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 367first strand
Strand 2
A
388 390anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
371 373first strand
Strand 2
A
376 378anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 475first strand
Strand 2
A
503 504anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il