Analysis of interatomic Contacts of Structural Units in PDB entry:
5CXX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CXX entry

There are 3 chains in PDB entry 5CXX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ASN 274
B
 MET 1ASN 274
C
 LYS 3ASN 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5CXX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed alpha
Helix 2
AA2
A
70 74Right-handed 310
Helix 3
AA3
A
76 88Right-handed alpha
Helix 4
AA4
A
115 124Right-handed alpha
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
132 141Right-handed alpha
Helix 7
AA7
A
146 148Right-handed 310
Helix 8
AA8
A
156 169Right-handed alpha
Helix 9
AA9
A
201 205Right-handed 310
Helix 10
AB1
A
227 239Right-handed alpha
Helix 11
AB2
A
254 267Right-handed alpha
Helix 12
AB3
A
268 272Right-handed 310
Helix 13
AB4
B
11 16Right-handed alpha
Helix 14
AB5
B
70 74Right-handed 310
Helix 15
AB6
B
76 88Right-handed alpha
Helix 16
AB7
B
115 124Right-handed alpha
Helix 17
AB8
B
124 132Right-handed alpha
Helix 18
AB9
B
132 141Right-handed alpha
Helix 19
AC1
B
146 148Right-handed 310
Helix 20
AC2
B
156 169Right-handed alpha
Helix 21
AC3
B
201 205Right-handed 310
Helix 22
AC4
B
227 239Right-handed alpha
Helix 23
AC5
B
254 267Right-handed alpha
Helix 24
AC6
B
268 272Right-handed 310
Helix 25
AC7
C
11 16Right-handed alpha
Helix 26
AC8
C
70 74Right-handed 310
Helix 27
AC9
C
76 88Right-handed alpha
Helix 28
AD1
C
115 124Right-handed alpha
Helix 29
AD2
C
124 132Right-handed alpha
Helix 30
AD3
C
132 141Right-handed alpha
Helix 31
AD4
C
146 148Right-handed 310
Helix 32
AD5
C
156 169Right-handed alpha
Helix 33
AD6
C
201 205Right-handed 310
Helix 34
AD7
C
227 239Right-handed alpha
Helix 35
AD8
C
254 267Right-handed alpha
Helix 36
AD9
C
268 272Right-handed 310
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There are 6 sheets in PDB entry 5CXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 33first strand
Strand 2
A
38 45anti-parallel
Strand 3
A
95 99anti-parallel
Strand 4
A
58 62parallel
Strand 5
A
150 155parallel
Strand 6
A
175 179parallel
Strand 7
A
213 219parallel
Strand 8
A
244 248parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
194 196anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 33first strand
Strand 2
B
38 45anti-parallel
Strand 3
B
95 99anti-parallel
Strand 4
B
58 62parallel
Strand 5
B
150 155parallel
Strand 6
B
175 179parallel
Strand 7
B
213 219parallel
Strand 8
B
244 248parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
194 196anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
26 33first strand
Strand 2
C
38 45anti-parallel
Strand 3
C
95 99anti-parallel
Strand 4
C
58 62parallel
Strand 5
C
150 155parallel
Strand 6
C
175 179parallel
Strand 7
C
213 219parallel
Strand 8
C
244 248parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
188 190first strand
Strand 2
C
194 196anti-parallel
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