Analysis of interatomic Contacts of Structural Units in PDB entry:
5CXY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CXY entry

There are 2 chains in PDB entry 5CXY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 89ALA 380
B
 LYS 89ALA 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 5CXY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
93 108Right-handed alpha
Helix 2
AA2
A
109 114Right-handed alpha
Helix 3
AA3
A
117 121Right-handed 310
Helix 4
AA4
A
141 147Right-handed alpha
Helix 5
AA5
A
168 172Right-handed 310
Helix 6
AA6
A
176 182Right-handed alpha
Helix 7
AA7
A
194 196Right-handed 310
Helix 8
AA8
A
197 202Right-handed alpha
Helix 9
AA9
A
213 219Right-handed alpha
Helix 10
AB1
A
220 223Right-handed 310
Helix 11
AB2
A
224 237Right-handed alpha
Helix 12
AB3
A
250 252Right-handed 310
Helix 13
AB4
A
253 267Right-handed alpha
Helix 14
AB5
A
281 292Right-handed alpha
Helix 15
AB6
A
300 312Right-handed alpha
Helix 16
AB7
A
348 352Right-handed 310
Helix 17
AB8
A
355 369Right-handed alpha
Helix 18
AB9
B
93 108Right-handed alpha
Helix 19
AC1
B
109 114Right-handed alpha
Helix 20
AC2
B
117 121Right-handed 310
Helix 21
AC3
B
141 147Right-handed alpha
Helix 22
AC4
B
168 172Right-handed 310
Helix 23
AC5
B
176 182Right-handed alpha
Helix 24
AC6
B
194 196Right-handed 310
Helix 25
AC7
B
197 202Right-handed alpha
Helix 26
AC8
B
213 220Right-handed alpha
Helix 27
AC9
B
221 223Right-handed 310
Helix 28
AD1
B
224 237Right-handed alpha
Helix 29
AD2
B
250 252Right-handed 310
Helix 30
AD3
B
253 267Right-handed alpha
Helix 31
AD4
B
281 292Right-handed alpha
Helix 32
AD5
B
300 312Right-handed alpha
Helix 33
AD6
B
350 354Right-handed 310
Helix 34
AD7
B
355 369Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5CXY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 276first strand
Strand 2
A
242 244parallel
Strand 3
A
207 209parallel
Strand 4
A
185 188parallel
Strand 5
A
159 165parallel
Strand 6
A
313 319parallel
Strand 7
A
373 374parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
138 139anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 276first strand
Strand 2
B
242 244parallel
Strand 3
B
207 209parallel
Strand 4
B
185 188parallel
Strand 5
B
159 165parallel
Strand 6
B
313 319parallel
Strand 7
B
373 374parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il