Analysis of interatomic Contacts of Structural Units in PDB entry:
5CYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CYP entry

There are 4 chains in PDB entry 5CYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 18ARG 289
B
 LYS 19LEU 290
C
 LYS 19ASN 291
D
 LYS 19ASN 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 5CYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 45Right-handed alpha
Helix 2
AA2
A
97 120Right-handed alpha
Helix 3
AA3
A
148 160Right-handed alpha
Helix 4
AA4
A
170 174Right-handed 310
Helix 5
AA5
A
175 193Right-handed alpha
Helix 6
AA6
A
200 204Right-handed 310
Helix 7
AA7
A
206 218Right-handed alpha
Helix 8
AA8
A
257 267Right-handed alpha
Helix 9
AA9
A
269 280Right-handed alpha
Helix 10
AB1
A
280 289Right-handed alpha
Helix 11
AB2
B
35 45Right-handed alpha
Helix 12
AB3
B
97 120Right-handed alpha
Helix 13
AB4
B
148 160Right-handed alpha
Helix 14
AB5
B
170 174Right-handed 310
Helix 15
AB6
B
175 193Right-handed alpha
Helix 16
AB7
B
200 204Right-handed 310
Helix 17
AB8
B
206 218Right-handed alpha
Helix 18
AB9
B
258 267Right-handed alpha
Helix 19
AC1
B
269 280Right-handed alpha
Helix 20
AC2
B
280 290Right-handed alpha
Helix 21
AC3
C
35 45Right-handed alpha
Helix 22
AC4
C
97 120Right-handed alpha
Helix 23
AC5
C
148 160Right-handed alpha
Helix 24
AC6
C
170 174Right-handed 310
Helix 25
AC7
C
175 193Right-handed alpha
Helix 26
AC8
C
200 204Right-handed 310
Helix 27
AC9
C
206 218Right-handed alpha
Helix 28
AD1
C
257 267Right-handed alpha
Helix 29
AD2
C
269 280Right-handed alpha
Helix 30
AD3
C
280 291Right-handed alpha
Helix 31
AD4
D
35 45Right-handed alpha
Helix 32
AD5
D
97 120Right-handed alpha
Helix 33
AD6
D
148 160Right-handed alpha
Helix 34
AD7
D
170 174Right-handed 310
Helix 35
AD8
D
175 193Right-handed alpha
Helix 36
AD9
D
200 204Right-handed 310
Helix 37
AE1
D
206 218Right-handed alpha
Helix 38
AE2
D
257 267Right-handed alpha
Helix 39
AE3
D
269 280Right-handed alpha
Helix 40
AE4
D
280 291Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 5CYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 75first strand
Strand 2
A
80 87anti-parallel
Strand 3
A
21 30parallel
Strand 4
A
135 141parallel
Strand 5
A
163 169parallel
Strand 6
A
222 223parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 74first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
22 30parallel
Strand 4
B
135 140parallel
Strand 5
B
163 168parallel
Strand 6
B
222 223parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
68 75first strand
Strand 2
C
80 87anti-parallel
Strand 3
C
22 30parallel
Strand 4
C
135 141parallel
Strand 5
C
163 169parallel
Strand 6
C
222 223parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
68 74first strand
Strand 2
D
80 87anti-parallel
Strand 3
D
21 30parallel
Strand 4
D
135 141parallel
Strand 5
D
163 169parallel
Strand 6
D
222 223parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il