Analysis of interatomic Contacts of Structural Units in PDB entry:
5CYU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CYU entry

There is 1 chain in PDB entry 5CYU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 75ILE 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 5CYU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 108Right-handed alpha
Helix 2
AA2
A
120 124Right-handed alpha
Helix 3
AA3
A
212 220Right-handed alpha
Helix 4
AA4
A
231 238Right-handed alpha
Helix 5
AA5
A
292 303Right-handed alpha
Helix 6
AA6
A
316 321Right-handed alpha
Helix 7
AA7
A
372 376Right-handed 310
Helix 8
AA8
A
424 431Right-handed alpha
Helix 9
AA9
A
440 445Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5CYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
85 87anti-parallel
Strand 3
A
97 98anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
360 366anti-parallel
Strand 3
A
345 351anti-parallel
Strand 4
A
148 154anti-parallel
Strand 5
A
166 171anti-parallel
Strand 6
A
387 391parallel
Strand 7
A
380 381anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
197 201anti-parallel
Strand 3
A
187 192anti-parallel
Strand 4
A
228 229parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 207first strand
Strand 2
A
197 201anti-parallel
Strand 3
A
187 192anti-parallel
Strand 4
A
336 338parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 291first strand
Strand 2
A
280 284anti-parallel
Strand 3
A
269 272anti-parallel
Strand 4
A
312 313parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 438first strand
Strand 2
A
395 400parallel
Strand 3
A
408 413anti-parallel
Strand 4
A
418 422anti-parallel
Strand 5
A
448 453parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il