Analysis of interatomic Contacts of Structural Units in PDB entry:
5CYY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CYY entry

There are 4 chains in PDB entry 5CYY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 363	GLY 695
B	THR 363	GLY 695
C	THR 363	GLY 695
D	SER 362	GLY 695

There are 36 helices in PDB entry 5CYY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	383	387	Right-handed 310
Helix 2	AA2	A	412	416	Right-handed 310
Helix 3	AA3	A	419	424	Right-handed 310
Helix 4	AA4	A	437	455	Right-handed alpha
Helix 5	AA5	A	469	473	Right-handed 310
Helix 6	AA6	A	474	485	Right-handed alpha
Helix 7	AA7	A	497	503	Right-handed alpha
Helix 8	AA8	A	529	545	Right-handed alpha
Helix 9	AA9	A	553	557	Right-handed 310
Helix 10	AB1	B	383	387	Right-handed 310
Helix 11	AB2	B	412	416	Right-handed 310
Helix 12	AB3	B	419	424	Right-handed 310
Helix 13	AB4	B	437	455	Right-handed alpha
Helix 14	AB5	B	469	473	Right-handed 310
Helix 15	AB6	B	474	485	Right-handed alpha
Helix 16	AB7	B	497	503	Right-handed alpha
Helix 17	AB8	B	529	545	Right-handed alpha
Helix 18	AB9	B	553	557	Right-handed 310
Helix 19	AC1	C	383	387	Right-handed 310
Helix 20	AC2	C	412	416	Right-handed 310
Helix 21	AC3	C	419	424	Right-handed 310
Helix 22	AC4	C	437	455	Right-handed alpha
Helix 23	AC5	C	469	473	Right-handed 310
Helix 24	AC6	C	474	486	Right-handed alpha
Helix 25	AC7	C	497	503	Right-handed alpha
Helix 26	AC8	C	529	545	Right-handed alpha
Helix 27	AC9	C	553	557	Right-handed 310
Helix 28	AD1	D	383	387	Right-handed 310
Helix 29	AD2	D	412	416	Right-handed 310
Helix 30	AD3	D	419	424	Right-handed 310
Helix 31	AD4	D	437	455	Right-handed alpha
Helix 32	AD5	D	469	473	Right-handed 310
Helix 33	AD6	D	474	486	Right-handed alpha
Helix 34	AD7	D	497	503	Right-handed alpha
Helix 35	AD8	D	529	545	Right-handed alpha
Helix 36	AD9	D	553	557	Right-handed 310

There are 20 sheets in PDB entry 5CYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	365	first strand
Strand 2	B	507	508	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	408	410	first strand
Strand 2	A	491	493	anti-parallel
Strand 3	A	459	465	parallel
Strand 4	A	427	433	parallel
Strand 5	A	510	514	anti-parallel
Strand 6	A	520	525	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	507	508	first strand
Strand 2	B	364	365	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	594	first strand
Strand 2	A	618	620	first strand
Strand 3	A	688	695	anti-parallel
Strand 4	A	571	572	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	594	first strand
Strand 2	A	605	613	anti-parallel
Strand 3	A	626	641	anti-parallel
Strand 4	A	664	683	anti-parallel
Strand 5	A	644	650	anti-parallel
Strand 6	A	653	659	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	572	first strand
Strand 2	A	688	695	anti-parallel
Strand 3	A	626	641	anti-parallel
Strand 4	A	664	683	anti-parallel
Strand 5	A	644	650	anti-parallel
Strand 6	A	653	659	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	410	first strand
Strand 2	B	491	493	anti-parallel
Strand 3	B	459	465	parallel
Strand 4	B	427	433	parallel
Strand 5	B	510	514	anti-parallel
Strand 6	B	520	525	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	594	first strand
Strand 2	B	618	620	first strand
Strand 3	B	688	695	anti-parallel
Strand 4	B	571	572	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	594	first strand
Strand 2	B	604	613	anti-parallel
Strand 3	B	626	641	anti-parallel
Strand 4	B	664	683	anti-parallel
Strand 5	B	644	648	anti-parallel
Strand 6	B	656	659	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	572	first strand
Strand 2	B	688	695	anti-parallel
Strand 3	B	626	641	anti-parallel
Strand 4	B	664	683	anti-parallel
Strand 5	B	644	648	anti-parallel
Strand 6	B	656	659	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	365	first strand
Strand 2	D	507	508	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	493	first strand
Strand 2	C	459	465	parallel
Strand 3	C	427	433	parallel
Strand 4	C	510	514	anti-parallel
Strand 5	C	520	525	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	507	508	first strand
Strand 2	D	364	365	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	594	first strand
Strand 2	C	618	620	first strand
Strand 3	C	688	695	anti-parallel
Strand 4	C	571	572	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	594	first strand
Strand 2	C	604	613	anti-parallel
Strand 3	C	626	641	anti-parallel
Strand 4	C	664	683	anti-parallel
Strand 5	C	644	650	anti-parallel
Strand 6	C	653	659	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	571	572	first strand
Strand 2	C	688	695	anti-parallel
Strand 3	C	626	641	anti-parallel
Strand 4	C	664	683	anti-parallel
Strand 5	C	644	650	anti-parallel
Strand 6	C	653	659	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	410	first strand
Strand 2	D	491	493	anti-parallel
Strand 3	D	459	465	parallel
Strand 4	D	427	433	parallel
Strand 5	D	510	514	anti-parallel
Strand 6	D	520	525	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	594	first strand
Strand 2	D	618	620	first strand
Strand 3	D	688	695	anti-parallel
Strand 4	D	571	572	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	594	first strand
Strand 2	D	604	613	anti-parallel
Strand 3	D	626	641	anti-parallel
Strand 4	D	664	683	anti-parallel
Strand 5	D	644	649	anti-parallel
Strand 6	D	655	659	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	571	572	first strand
Strand 2	D	688	695	anti-parallel
Strand 3	D	626	641	anti-parallel
Strand 4	D	664	683	anti-parallel
Strand 5	D	644	649	anti-parallel
Strand 6	D	655	659	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CYY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CYY