Analysis of interatomic Contacts of Structural Units in PDB entry:
5CYZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CYZ entry

There are 20 chains in PDB entry 5CYZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ARG 7
A
 PHE 9ARG 13
A
 ILE 15ILE 129
A
 PRO 131SER 153
A
 TYR 156ASN 170
A
 SER 172LYS 221
A
 GLN 223GLU 230
A
 LYS 232CYS 255
A
 ASN 257GLU 262
A
 PRO 264PHE 273
A
 ASP 275ILE 278
A
 LEU 280ASN 334
A
 ILE 336ILE 336
A
 LEU 338TYR 351
A
 ASN 353ILE 364
A
 GLN 366LYS 388
C
 GLU 90LYS 98
C
 LEU 100ASN 154
C
 TYR 156GLU 176
C
 HIS 178ASN 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5CYZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 59Right-handed alpha
Helix 2
AA2
A
89 96Right-handed alpha
Helix 3
AA3
A
101 122Right-handed alpha
Helix 4
AA4
A
130 132Right-handed 310
Helix 5
AA5
A
139 142Right-handed 310
Helix 6
AA6
A
176 180Right-handed 310
Helix 7
AA7
A
181 186Right-handed alpha
Helix 8
AA8
A
191 209Right-handed alpha
Helix 9
AA9
A
220 235Right-handed alpha
Helix 10
AB1
A
236 241Right-handed alpha
Helix 11
AB2
A
245 258Right-handed alpha
Helix 12
AB3
A
265 280Right-handed alpha
Helix 13
AB4
A
288 308Right-handed alpha
Helix 14
AB5
A
330 344Right-handed alpha
Helix 15
AB6
A
360 365Right-handed alpha
Helix 16
AB7
A
365 374Right-handed alpha
Helix 17
AB8
A
378 387Right-handed alpha
Helix 18
AB9
C
93 111Right-handed alpha
Helix 19
AC1
C
120 127Right-handed alpha
Helix 20
AC2
C
129 135Right-handed alpha
Helix 21
AC3
C
136 140Right-handed 310
Helix 22
AC4
C
147 152Right-handed alpha
Helix 23
AC5
C
152 157Right-handed alpha
Helix 24
AC6
C
157 162Right-handed alpha
Helix 25
AC7
C
169 173Right-handed 310
Helix 26
AC8
C
183 188Right-handed 310
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There are 3 sheets in PDB entry 5CYZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
9 17anti-parallel
Strand 3
A
22 28anti-parallel
Strand 4
A
34 41anti-parallel
Strand 5
A
77 83anti-parallel
Strand 6
A
68 74anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 88first strand
Strand 2
A
134 137anti-parallel
Strand 3
A
145 147anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
154 155anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il