Analysis of interatomic Contacts of Structural Units in PDB entry:
5CZ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5CZ2 entry

There are 12 chains in PDB entry 5CZ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 51	GLY 209
B	LEU 56	GLY 209
C	GLY 50	GLY 209
D	LEU 56	GLY 209
E	VAL 51	GLY 209
F	LEU 56	TRP 208
G	ALA 1	PRO 41
H	LEU 2	PRO 41
I	GLU 3	PRO 41
J	ALA 1	PRO 41
K	LEU 2	PRO 41
L	ALA 1	PRO 41

There are 52 helices in PDB entry 5CZ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	75	Right-handed 310
Helix 2	AA2	A	98	114	Right-handed alpha
Helix 3	AA3	A	129	139	Right-handed alpha
Helix 4	AA4	A	155	173	Right-handed alpha
Helix 5	AA5	A	179	194	Right-handed alpha
Helix 6	AA6	A	202	208	Right-handed alpha
Helix 7	AA7	B	70	75	Right-handed 310
Helix 8	AA8	B	98	114	Right-handed alpha
Helix 9	AA9	B	129	139	Right-handed alpha
Helix 10	AB1	B	155	172	Right-handed alpha
Helix 11	AB2	B	179	194	Right-handed alpha
Helix 12	AB3	B	202	208	Right-handed alpha
Helix 13	AB4	C	70	75	Right-handed 310
Helix 14	AB5	C	98	114	Right-handed alpha
Helix 15	AB6	C	129	139	Right-handed alpha
Helix 16	AB7	C	155	173	Right-handed alpha
Helix 17	AB8	C	179	194	Right-handed alpha
Helix 18	AB9	C	202	208	Right-handed alpha
Helix 19	AC1	D	70	75	Right-handed 310
Helix 20	AC2	D	98	114	Right-handed alpha
Helix 21	AC3	D	129	139	Right-handed alpha
Helix 22	AC4	D	158	172	Right-handed alpha
Helix 23	AC5	D	179	194	Right-handed alpha
Helix 24	AC6	D	202	208	Right-handed alpha
Helix 25	AC7	E	70	75	Right-handed 310
Helix 26	AC8	E	98	114	Right-handed alpha
Helix 27	AC9	E	129	139	Right-handed alpha
Helix 28	AD1	E	155	173	Right-handed alpha
Helix 29	AD2	E	179	194	Right-handed alpha
Helix 30	AD3	E	202	208	Right-handed alpha
Helix 31	AD4	F	102	114	Right-handed alpha
Helix 32	AD5	F	129	138	Right-handed alpha
Helix 33	AD6	F	158	173	Right-handed alpha
Helix 34	AD7	F	179	194	Right-handed alpha
Helix 35	AD8	F	202	208	Right-handed alpha
Helix 36	AD9	G	2	13	Right-handed alpha
Helix 37	AE1	G	15	24	Right-handed alpha
Helix 38	AE2	G	26	37	Right-handed alpha
Helix 39	AE3	H	3	13	Right-handed alpha
Helix 40	AE4	H	15	24	Right-handed alpha
Helix 41	AE5	H	26	37	Right-handed alpha
Helix 42	AE6	I	4	13	Right-handed alpha
Helix 43	AE7	I	15	24	Right-handed alpha
Helix 44	AE8	I	26	37	Right-handed alpha
Helix 45	AE9	J	2	13	Right-handed alpha
Helix 46	AF1	J	15	24	Right-handed alpha
Helix 47	AF2	J	26	37	Right-handed alpha
Helix 48	AF3	K	3	13	Right-handed alpha
Helix 49	AF4	K	26	37	Right-handed alpha
Helix 50	AF5	L	2	13	Right-handed alpha
Helix 51	AF6	L	15	24	Right-handed alpha
Helix 52	AF7	L	26	37	Right-handed alpha

There are 6 sheets in PDB entry 5CZ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	94	first strand
Strand 2	A	77	83	anti-parallel
Strand 3	A	61	68	anti-parallel
Strand 4	A	118	120	parallel
Strand 5	A	142	144	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	94	first strand
Strand 2	B	77	83	anti-parallel
Strand 3	B	61	68	anti-parallel
Strand 4	B	118	120	parallel
Strand 5	B	142	144	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	94	first strand
Strand 2	C	77	83	anti-parallel
Strand 3	C	61	68	anti-parallel
Strand 4	C	118	120	parallel
Strand 5	C	142	144	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	94	first strand
Strand 2	D	77	83	anti-parallel
Strand 3	D	61	68	anti-parallel
Strand 4	D	118	120	parallel
Strand 5	D	142	144	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	94	first strand
Strand 2	E	77	83	anti-parallel
Strand 3	E	61	68	anti-parallel
Strand 4	E	118	120	parallel
Strand 5	E	142	144	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	89	92	first strand
Strand 2	F	79	83	anti-parallel
Strand 3	F	61	65	anti-parallel
Strand 4	F	118	120	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5CZ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5CZ2