Analysis of interatomic Contacts of Structural Units in PDB entry:
5CZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CZD entry

There are 2 chains in PDB entry 5CZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 20PRO 320
B
 MET 1MET 77
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5CZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 43Right-handed alpha
Helix 2
AA2
A
43 58Right-handed alpha
Helix 3
AA3
A
60 67Right-handed alpha
Helix 4
AA4
A
73 95Right-handed alpha
Helix 5
AA5
A
107 116Right-handed alpha
Helix 6
AA6
A
120 142Right-handed alpha
Helix 7
AA7
A
155 169Right-handed alpha
Helix 8
AA8
A
192 203Right-handed alpha
Helix 9
AA9
A
217 219Right-handed 310
Helix 10
AB1
A
220 231Right-handed alpha
Helix 11
AB2
A
255 266Right-handed alpha
Helix 12
AB3
A
273 283Right-handed alpha
Helix 13
AB4
A
300 305Right-handed alpha
Helix 14
AB5
A
313 318Right-handed alpha
Helix 15
AB6
B
3 12Right-handed alpha
Helix 16
AB7
B
35 51Right-handed alpha
Helix 17
AB8
B
55 65Right-handed 310
Helix 18
AB9
B
66 76Right-handed alpha
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There are 2 sheets in PDB entry 5CZD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
244 245anti-parallel
Strand 3
A
101 104parallel
Strand 4
A
21 25parallel
Strand 5
A
287 291parallel
Strand 6
A
308 312parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
146 152anti-parallel
Strand 3
A
183 189anti-parallel
Strand 4
A
173 180anti-parallel
Strand 5
A
271 272parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il