Analysis of interatomic Contacts of Structural Units in PDB entry:
5CZV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5CZV entry

There are 3 chains in PDB entry 5CZV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 1391PRO 1633
H
GLN 1PRO 216
L
ILE 2GLY 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5CZV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
1392 1396Right-handed 310
Helix 2
AA2
A
1410 1415Right-handed alpha
Helix 3
AA3
A
1433 1437Right-handed 310
Helix 4
AA4
A
1443 1447Right-handed 310
Helix 5
AA5
A
1448 1457Right-handed 310
Helix 6
AA6
A
1462 1466Right-handed 310
Helix 7
AA7
A
1468 1479Right-handed alpha
Helix 8
AA8
A
1485 1489Right-handed 310
Helix 9
AA9
A
1490 1499Right-handed 310
Helix 10
AB1
A
1520 1527Right-handed alpha
Helix 11
AB2
A
1527 1540Right-handed alpha
Helix 12
AB3
A
1603 1617Right-handed alpha
Helix 13
AB4
H
28 32Right-handed 310
Helix 14
AB5
H
62 65Right-handed 310
Helix 15
AB6
H
87 91Right-handed 310
Helix 16
AB7
H
159 161Right-handed 310
Helix 17
AB8
H
190 194Right-handed 310
Helix 18
AB9
L
79 83Right-handed 310
Helix 19
AC1
L
121 127Right-handed alpha
Helix 20
AC2
L
183 188Right-handed alpha
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There are 12 sheets in PDB entry 5CZV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1542 1545first strand
Strand 2
A
1579 1587anti-parallel
Strand 3
A
1555 1558anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1542 1545first strand
Strand 2
A
1579 1587anti-parallel
Strand 3
A
1512 1517anti-parallel
Strand 4
A
1626 1632anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
110 114parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
10 12first strand
Strand 2
H
110 114parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
105 106anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
123 127first strand
Strand 2
H
141 148anti-parallel
Strand 3
H
179 185anti-parallel
Strand 4
H
167 173anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
156 157first strand
Strand 2
H
198 200anti-parallel
Strand 3
H
211 213anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 13first strand
Strand 2
L
102 106parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
97 98anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
153 154first strand
Strand 2
L
145 150anti-parallel
Strand 3
L
191 197anti-parallel
Strand 4
L
205 210anti-parallel
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