Analysis of interatomic Contacts of Structural Units in PDB entry:
5D01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5D01 entry

There are 2 chains in PDB entry 5D01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2ALA 374
B
 ARG 2ALA 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5D01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 30Right-handed alpha
Helix 2
AA2
A
70 87Right-handed alpha
Helix 3
AA3
A
98 110Right-handed alpha
Helix 4
AA4
A
122 131Right-handed alpha
Helix 5
AA5
A
134 144Right-handed alpha
Helix 6
AA6
A
152 164Right-handed alpha
Helix 7
AA7
A
185 193Right-handed alpha
Helix 8
AA8
A
209 212Right-handed 310
Helix 9
AA9
A
213 226Right-handed alpha
Helix 10
AB1
A
240 251Right-handed alpha
Helix 11
AB2
A
252 255Right-handed 310
Helix 12
AB3
A
267 272Right-handed alpha
Helix 13
AB4
A
286 295Right-handed alpha
Helix 14
AB5
A
306 311Right-handed alpha
Helix 15
AB6
A
324 337Right-handed alpha
Helix 16
AB7
A
338 356Right-handed alpha
Helix 17
AB8
A
358 374Right-handed alpha
Helix 18
AB9
B
15 31Right-handed alpha
Helix 19
AC1
B
70 86Right-handed alpha
Helix 20
AC2
B
98 111Right-handed alpha
Helix 21
AC3
B
122 131Right-handed alpha
Helix 22
AC4
B
134 144Right-handed alpha
Helix 23
AC5
B
152 163Right-handed alpha
Helix 24
AC6
B
185 193Right-handed alpha
Helix 25
AC7
B
209 212Right-handed 310
Helix 26
AC8
B
213 226Right-handed alpha
Helix 27
AC9
B
240 252Right-handed alpha
Helix 28
AD1
B
265 272Right-handed alpha
Helix 29
AD2
B
286 295Right-handed alpha
Helix 30
AD3
B
306 310Right-handed 310
Helix 31
AD4
B
324 338Right-handed alpha
Helix 32
AD5
B
338 355Right-handed alpha
Helix 33
AD6
B
358 374Right-handed alpha
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There are 4 sheets in PDB entry 5D01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
34 39parallel
Strand 3
A
5 9parallel
Strand 4
A
90 94parallel
Strand 5
A
115 120parallel
Strand 6
A
147 150parallel
Strand 7
A
169 171parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 260first strand
Strand 2
A
230 235parallel
Strand 3
A
200 205parallel
Strand 4
A
275 278parallel
Strand 5
A
299 302parallel
Strand 6
A
318 320parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 57first strand
Strand 2
B
34 39parallel
Strand 3
B
5 9parallel
Strand 4
B
90 94parallel
Strand 5
B
115 120parallel
Strand 6
B
147 150parallel
Strand 7
B
169 171parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 259first strand
Strand 2
B
230 235parallel
Strand 3
B
200 205parallel
Strand 4
B
275 278parallel
Strand 5
B
299 302parallel
Strand 6
B
318 320parallel
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