Analysis of interatomic Contacts of Structural Units in PDB entry:
5D06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5D06 entry

There is 1 chain in PDB entry 5D06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	ALA 1249

There are119 helices in PDB entry 5D06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	61	Right-handed 310
Helix 2	AA2	A	142	145	Right-handed 310
Helix 3	AA3	A	152	156	Right-handed 310
Helix 4	AA4	A	159	174	Right-handed alpha
Helix 5	AA5	A	208	224	Right-handed alpha
Helix 6	AA6	A	240	246	Right-handed alpha
Helix 7	AA7	A	247	250	Right-handed 310
Helix 8	AA8	A	256	258	Right-handed 310
Helix 9	AA9	A	259	267	Right-handed alpha
Helix 10	AB1	A	274	278	Right-handed 310
Helix 11	AB2	A	291	302	Right-handed alpha
Helix 12	AB3	A	303	306	Right-handed 310
Helix 13	AB4	A	316	325	Right-handed alpha
Helix 14	AB5	A	345	355	Right-handed alpha
Helix 15	AB6	A	372	384	Right-handed alpha
Helix 16	AB7	A	391	431	Right-handed alpha
Helix 17	AB8	A	507	510	Right-handed 310
Helix 18	AB9	A	511	529	Right-handed alpha
Helix 19	AC1	A	536	540	Right-handed 310
Helix 20	AC2	A	541	556	Right-handed alpha
Helix 21	AC3	A	569	581	Right-handed alpha
Helix 22	AC4	A	590	592	Right-handed 310
Helix 23	AC5	A	594	605	Right-handed alpha
Helix 24	AC6	A	673	678	Right-handed alpha
Helix 25	AC7	A	682	693	Right-handed alpha
Helix 26	AC8	A	728	744	Right-handed alpha
Helix 27	AC9	A	873	880	Right-handed alpha
Helix 28	AD1	A	881	886	Right-handed alpha
Helix 29	AD2	A	892	899	Right-handed alpha
Helix 30	AD3	A	901	910	Right-handed alpha
Helix 31	AD4	A	928	942	Right-handed alpha
Helix 32	AD5	A	947	956	Right-handed alpha
Helix 33	AD6	A	957	966	Right-handed alpha
Helix 34	AD7	A	967	969	Right-handed 310
Helix 35	AD8	A	975	992	Right-handed alpha
Helix 36	AD9	A	994	996	Right-handed 310
Helix 37	AE1	A	997	1021	Right-handed alpha
Helix 38	AE2	A	1022	1027	Right-handed alpha
Helix 39	AE3	A	1029	1042	Right-handed alpha
Helix 40	AE4	A	1069	1073	Right-handed 310
Helix 41	AE5	A	1075	1088	Right-handed alpha
Helix 42	AE6	A	1092	1105	Right-handed alpha
Helix 43	AE7	A	1128	1144	Right-handed alpha
Helix 44	AE8	A	1146	1152	Right-handed 310
Helix 45	AE9	A	1180	1194	Right-handed alpha
Helix 46	AF1	A	1212	1214	Right-handed 310
Helix 47	AF2	A	1264	1283	Right-handed alpha
Helix 48	AF3	A	1301	1316	Right-handed alpha
Helix 49	AF4	A	1321	1325	Right-handed 310
Helix 50	AF5	A	1349	1353	Right-handed 310
Helix 51	AF6	A	1359	1367	Right-handed alpha
Helix 52	AF7	A	1368	1371	Right-handed 310
Helix 53	AF8	A	1372	1387	Right-handed alpha
Helix 54	AF9	A	1418	1426	Right-handed 310
Helix 55	AG1	A	1431	1449	Right-handed alpha
Helix 56	AG2	A	1464	1474	Right-handed alpha
Helix 57	AG3	A	1475	1484	Right-handed alpha
Helix 58	AG4	A	1495	1499	Right-handed 310
Helix 59	AG5	A	1509	1527	Right-handed alpha
Helix 60	AG6	B	57	61	Right-handed 310
Helix 61	AG7	B	152	156	Right-handed 310
Helix 62	AG8	B	163	173	Right-handed alpha
Helix 63	AG9	B	208	224	Right-handed alpha
Helix 64	AH1	B	240	246	Right-handed alpha
Helix 65	AH2	B	247	250	Right-handed 310
Helix 66	AH3	B	256	258	Right-handed 310
Helix 67	AH4	B	259	267	Right-handed alpha
Helix 68	AH5	B	274	279	Right-handed 310
Helix 69	AH6	B	289	294	Right-handed 310
Helix 70	AH7	B	295	302	Right-handed alpha
Helix 71	AH8	B	303	310	Right-handed 310
Helix 72	AH9	B	316	327	Right-handed alpha
Helix 73	AI1	B	347	352	Right-handed alpha
Helix 74	AI2	B	372	384	Right-handed alpha
Helix 75	AI3	B	391	424	Right-handed alpha
Helix 76	AI4	B	424	431	Right-handed alpha
Helix 77	AI5	B	507	510	Right-handed 310
Helix 78	AI6	B	511	529	Right-handed alpha
Helix 79	AI7	B	536	540	Right-handed 310
Helix 80	AI8	B	541	556	Right-handed alpha
Helix 81	AI9	B	569	581	Right-handed alpha
Helix 82	AJ1	B	590	592	Right-handed 310
Helix 83	AJ2	B	594	607	Right-handed alpha
Helix 84	AJ3	B	673	678	Right-handed alpha
Helix 85	AJ4	B	682	693	Right-handed alpha
Helix 86	AJ5	B	728	744	Right-handed alpha
Helix 87	AJ6	B	873	880	Right-handed alpha
Helix 88	AJ7	B	892	899	Right-handed alpha
Helix 89	AJ8	B	901	910	Right-handed alpha
Helix 90	AJ9	B	928	942	Right-handed alpha
Helix 91	AK1	B	947	956	Right-handed alpha
Helix 92	AK2	B	957	966	Right-handed alpha
Helix 93	AK3	B	967	969	Right-handed 310
Helix 94	AK4	B	975	992	Right-handed alpha
Helix 95	AK5	B	994	996	Right-handed 310
Helix 96	AK6	B	997	1021	Right-handed alpha
Helix 97	AK7	B	1022	1027	Right-handed alpha
Helix 98	AK8	B	1029	1042	Right-handed alpha
Helix 99	AK9	B	1069	1073	Right-handed 310
Helix 100	AL1	B	1075	1088	Right-handed alpha
Helix 101	AL2	B	1092	1105	Right-handed alpha
Helix 102	AL3	B	1128	1144	Right-handed alpha
Helix 103	AL4	B	1146	1152	Right-handed 310
Helix 104	AL5	B	1170	1175	Right-handed alpha
Helix 105	AL6	B	1180	1194	Right-handed alpha
Helix 106	AL7	B	1211	1216	Right-handed alpha
Helix 107	AL8	B	1264	1283	Right-handed alpha
Helix 108	AL9	B	1300	1316	Right-handed alpha
Helix 109	AM1	B	1321	1327	Right-handed 310
Helix 110	AM2	B	1349	1353	Right-handed 310
Helix 111	AM3	B	1359	1367	Right-handed alpha
Helix 112	AM4	B	1368	1371	Right-handed 310
Helix 113	AM5	B	1372	1387	Right-handed alpha
Helix 114	AM6	B	1418	1426	Right-handed 310
Helix 115	AM7	B	1431	1449	Right-handed alpha
Helix 116	AM8	B	1464	1474	Right-handed alpha
Helix 117	AM9	B	1475	1484	Right-handed alpha
Helix 118	AN1	B	1495	1499	Right-handed 310
Helix 119	AN2	B	1511	1527	Right-handed alpha

There are 42 sheets in PDB entry 5D06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	101	first strand
Strand 2	A	47	53	anti-parallel
Strand 3	A	6	10	parallel
Strand 4	A	653	654	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	126	130	parallel
Strand 3	A	105	114	anti-parallel
Strand 4	A	64	67	anti-parallel
Strand 5	A	83	86	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	126	130	parallel
Strand 3	A	105	114	anti-parallel
Strand 4	A	120	122	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	A	140	141	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	151	first strand
Strand 2	A	177	180	parallel
Strand 3	A	226	231	parallel
Strand 4	A	531	534	parallel
Strand 5	A	560	563	parallel
Strand 6	A	584	588	parallel
Strand 7	A	662	665	parallel
Strand 8	A	696	700	parallel
Strand 9	A	147	151	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	186	first strand
Strand 2	A	195	201	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	499	501	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	456	first strand
Strand 2	A	462	466	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	469	470	first strand
Strand 2	A	494	495	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	608	609	first strand
Strand 2	A	752	759	parallel
Strand 3	A	762	769	anti-parallel
Strand 4	A	774	781	anti-parallel
Strand 5	A	859	867	anti-parallel
Strand 6	A	800	812	anti-parallel
Strand 7	A	828	832	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	720	first strand
Strand 2	A	822	823	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	795	798	first strand
Strand 2	A	846	850	anti-parallel
Strand 3	A	837	841	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1043	1044	first strand
Strand 2	A	1059	1060	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1063	1064	first strand
Strand 2	A	1507	1508	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1154	1157	first strand
Strand 2	A	1176	1179	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1195	1198	first strand
Strand 2	A	1216	1221	anti-parallel
Strand 3	A	1228	1230	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1262	1263	first strand
Strand 2	A	1344	1345	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1317	1318	first strand
Strand 2	A	1340	1341	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1393	1394	first strand
Strand 2	A	1429	1430	anti-parallel
Strand 3	A	1493	1494	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1453	1454	first strand
Strand 2	A	1462	1463	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	101	first strand
Strand 2	B	47	53	anti-parallel
Strand 3	B	6	10	parallel
Strand 4	B	653	654	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	126	130	parallel
Strand 3	B	105	114	anti-parallel
Strand 4	B	64	67	anti-parallel
Strand 5	B	83	86	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	126	130	parallel
Strand 3	B	105	114	anti-parallel
Strand 4	B	120	122	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	134	135	first strand
Strand 2	B	140	141	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	151	first strand
Strand 2	B	177	180	parallel
Strand 3	B	226	231	parallel
Strand 4	B	531	534	parallel
Strand 5	B	560	563	parallel
Strand 6	B	584	588	parallel
Strand 7	B	662	665	parallel
Strand 8	B	696	700	parallel
Strand 9	B	147	151	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	186	first strand
Strand 2	B	195	201	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	499	501	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	456	first strand
Strand 2	B	462	466	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	469	470	first strand
Strand 2	B	494	495	anti-parallel

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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	608	609	first strand
Strand 2	B	752	759	parallel
Strand 3	B	762	769	anti-parallel
Strand 4	B	774	781	anti-parallel
Strand 5	B	859	867	anti-parallel
Strand 6	B	800	812	anti-parallel
Strand 7	B	828	832	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	630	636	first strand
Strand 2	B	643	649	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	720	first strand
Strand 2	B	822	823	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	795	798	first strand
Strand 2	B	846	850	anti-parallel
Strand 3	B	837	841	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1043	1044	first strand
Strand 2	B	1059	1060	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1063	1064	first strand
Strand 2	B	1507	1508	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1154	1157	first strand
Strand 2	B	1176	1179	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1219	1221	first strand
Strand 2	B	1228	1230	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1262	1263	first strand
Strand 2	B	1344	1345	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1317	1318	first strand
Strand 2	B	1340	1341	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1393	1394	first strand
Strand 2	B	1429	1430	anti-parallel
Strand 3	B	1493	1494	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1453	1455	first strand
Strand 2	B	1461	1463	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5D06

Analysis of interatomic Contacts of Structural Units in PDB entry:
5D06